Variant report

Variant	rs6130055
Chromosome Location	chr20:40767064-40767065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12624403	0.81[EUR][1000 genomes]
rs12625660	0.90[EUR][1000 genomes]
rs12625871	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16986553	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223422	0.92[EUR][1000 genomes]
rs6029997	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6124418	0.96[EUR][1000 genomes]
rs6124419	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6124420	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6124431	0.90[EUR][1000 genomes]
rs6130039	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6130040	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6130051	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6130052	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6130094	0.81[EUR][1000 genomes]
rs8183826	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40766200-40768600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr20:40766400-40767600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:40766600-40769600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:40766800-40767200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:40766800-40767600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:40767000-40767800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr20:40767000-40768200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:40767000-40768200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr20:40767000-40768400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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