Variant report

Variant	rs12624699
Chromosome Location	chr20:15540370-15540371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1237183	1.00[JPT][hapmap]
rs12625868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7273284	1.00[JPT][hapmap]
rs73100236	0.86[ASN][1000 genomes]
rs888123	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15533400-15541600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:15533800-15541600	Weak transcription	Fetal Brain Male	brain
3	chr20:15537000-15541200	Weak transcription	Fetal Stomach	stomach
4	chr20:15537800-15541600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr20:15538400-15541800	Weak transcription	Colon Smooth Muscle	Colon
6	chr20:15538400-15541800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr20:15538800-15542200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:15539000-15541400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr20:15540200-15540400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr20:15540200-15540400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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