The 2.0 version of rSNPBase

Variant report

Variant rs12626796
Chromosome Location chr21:40171290-40171291
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:40163000-40171400 Enhancers Rectal Mucosa Donor 31 rectum
2 chr21:40163400-40175400 Weak transcription Primary hematopoietic stem cells blood
3 chr21:40165000-40176600 Enhancers Fetal Intestine Large intestine
4 chr21:40166400-40175400 Enhancers Fetal Intestine Small intestine
5 chr21:40166400-40176000 Weak transcription Pancreas Pancrea
6 chr21:40166600-40177000 Weak transcription Gastric stomach
7 chr21:40166800-40171600 Enhancers NHEK skin
8 chr21:40167000-40174600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr21:40167000-40176600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr21:40167200-40171600 Enhancers Placenta Amnion Placenta Amnion
11 chr21:40167600-40175400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr21:40168400-40171800 Enhancers HMEC breast
13 chr21:40168400-40174000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr21:40168800-40172800 Enhancers Stomach Mucosa stomach
15 chr21:40168800-40174400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr21:40169000-40174200 Weak transcription Fetal Lung lung
17 chr21:40169600-40176800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr21:40169800-40174200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr21:40169800-40174400 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr21:40169800-40175800 Weak transcription NHLF lung
21 chr21:40170400-40176600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr21:40170600-40174000 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr21:40170800-40171400 Enhancers K562 blood
24 chr21:40170800-40176400 Weak transcription Muscle Satellite Cultured Cells --
25 chr21:40171000-40171400 Enhancers Hela-S3 cervix
26 chr21:40171000-40172000 Weak transcription HepG2 liver
27 chr21:40171000-40174000 Weak transcription Colonic Mucosa Colon
28 chr21:40171000-40174000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr21:40171000-40174400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr21:40171000-40175800 Weak transcription NH-A brain
31 chr21:40171200-40172200 Weak transcription Small Intestine intestine
32 chr21:40171200-40172600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr21:40171200-40172600 Weak transcription Esophagus oesophagus
34 chr21:40171200-40172800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr21:40171200-40173000 Enhancers A549 lung
36 chr21:40171200-40173400 Weak transcription Placenta Placenta
37 chr21:40171200-40174000 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr21:40171200-40174000 Weak transcription Duodenum Mucosa Duodenum
39 chr21:40171200-40176600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015