The 2.0 version of rSNPBase

Variant report

Variant rs13047789
Chromosome Location chr21:40169945-40169946
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:40163000-40170400 Weak transcription Colonic Mucosa Colon
2 chr21:40163000-40171400 Enhancers Rectal Mucosa Donor 31 rectum
3 chr21:40163400-40175400 Weak transcription Primary hematopoietic stem cells blood
4 chr21:40164400-40171200 Enhancers Duodenum Mucosa Duodenum
5 chr21:40165000-40176600 Enhancers Fetal Intestine Large intestine
6 chr21:40165600-40171000 Enhancers HepG2 liver
7 chr21:40166200-40170800 Weak transcription Small Intestine intestine
8 chr21:40166400-40175400 Enhancers Fetal Intestine Small intestine
9 chr21:40166400-40176000 Weak transcription Pancreas Pancrea
10 chr21:40166600-40177000 Weak transcription Gastric stomach
11 chr21:40166800-40171600 Enhancers NHEK skin
12 chr21:40167000-40171200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr21:40167000-40174600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr21:40167000-40176600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr21:40167200-40171600 Enhancers Placenta Amnion Placenta Amnion
16 chr21:40167600-40171000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
17 chr21:40167600-40175400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr21:40168200-40170600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr21:40168200-40171000 Enhancers Fetal Adrenal Gland Adrenal Gland
20 chr21:40168200-40171000 Enhancers NH-A brain
21 chr21:40168200-40171200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr21:40168400-40171800 Enhancers HMEC breast
23 chr21:40168400-40174000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr21:40168600-40170400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr21:40168600-40171200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr21:40168800-40170200 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr21:40168800-40170600 Enhancers Rectal Mucosa Donor 29 rectum
28 chr21:40168800-40172800 Enhancers Stomach Mucosa stomach
29 chr21:40168800-40174400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr21:40169000-40174200 Weak transcription Fetal Lung lung
31 chr21:40169200-40171200 Enhancers HUES6 Cell Line embryonic stem cell
32 chr21:40169200-40171200 Enhancers Placenta Placenta
33 chr21:40169400-40170000 Enhancers HUVEC blood vessel
34 chr21:40169400-40170200 Enhancers Fetal Heart heart
35 chr21:40169400-40170800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
36 chr21:40169400-40171000 Enhancers Sigmoid Colon Sigmoid Colon
37 chr21:40169400-40171200 Flanking Active TSS A549 lung
38 chr21:40169600-40170200 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr21:40169600-40170200 Enhancers ES-WA7 Cell Line embryonic stem cell
40 chr21:40169600-40176800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr21:40169800-40170200 Enhancers Hela-S3 cervix
42 chr21:40169800-40170400 Weak transcription NHDF-Ad bronchial
43 chr21:40169800-40170600 Weak transcription Muscle Satellite Cultured Cells --
44 chr21:40169800-40170800 Weak transcription Esophagus oesophagus
45 chr21:40169800-40170800 Flanking Active TSS K562 blood
46 chr21:40169800-40174200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr21:40169800-40174400 Weak transcription Primary hematopoietic stem cells short term culture blood
48 chr21:40169800-40175800 Weak transcription NHLF lung

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Last update: Aug 31, 2015