Variant report

Variant	rs12629175
Chromosome Location	chr3:138907177-138907178
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138899218..138902119-chr3:138905837..138907445,2	K562	blood:
2	chr3:138899218..138900928-chr3:138905561..138907337,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10935312	0.83[ASN][1000 genomes]
rs11706018	1.00[ASN][1000 genomes]
rs11707723	0.83[ASN][1000 genomes]
rs11719269	0.83[ASN][1000 genomes]
rs11927735	0.83[ASN][1000 genomes]
rs12629248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12629439	0.83[ASN][1000 genomes]
rs12630223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12630262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12630333	1.00[ASN][1000 genomes]
rs12632107	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[MKK][hapmap];0.80[YRI][hapmap]
rs12632125	0.81[ASN][1000 genomes]
rs12632376	0.85[ASN][1000 genomes]
rs12635620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12636332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12636430	1.00[ASN][1000 genomes]
rs12637915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13069778	0.81[ASN][1000 genomes]
rs13075082	0.83[ASN][1000 genomes]
rs13079289	0.83[ASN][1000 genomes]
rs13079437	0.83[ASN][1000 genomes]
rs13097708	0.83[ASN][1000 genomes]
rs1554563	0.83[ASN][1000 genomes]
rs1554564	0.83[ASN][1000 genomes]
rs1554565	0.83[ASN][1000 genomes]
rs2685014	0.92[ASN][1000 genomes]
rs35781224	0.83[ASN][1000 genomes]
rs4429660	0.83[ASN][1000 genomes]
rs4894384	0.81[ASN][1000 genomes]
rs55683392	0.87[ASN][1000 genomes]
rs56729627	0.83[ASN][1000 genomes]
rs57272617	0.95[ASN][1000 genomes]
rs57678437	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6775443	0.84[ASN][1000 genomes]
rs6778179	0.83[ASN][1000 genomes]
rs6778394	0.83[ASN][1000 genomes]
rs73865838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73865842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73868514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73868515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7426421	0.82[ASN][1000 genomes]
rs7614968	0.81[ASN][1000 genomes]
rs7615670	0.83[ASN][1000 genomes]
rs7623750	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs7637464	0.83[ASN][1000 genomes]
rs7639780	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138903400-138907400	Enhancers	Ovary	ovary
2	chr3:138906400-138908800	Weak transcription	Pancreas	Pancrea

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