Variant report

Variant	rs57272617
Chromosome Location	chr3:138854579-138854580
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138853618..138855657-chr3:138955881..138958627,2	K562	blood:
2	chr3:138852662..138855349-chr3:139061361..139063361,3	K562	blood:
3	chr3:138846515..138849332-chr3:138852696..138854714,2	K562	blood:
4	chr3:138852662..138855349-chr3:139061361..139062870,2	K562	blood:
5	chr3:138852328..138855231-chr3:139061265..139063191,2	MCF-7	breast:
6	chr3:138847994..138851900-chr3:138852497..138855700,4	K562	blood:

Variant related genes	Relation type
ENSG00000175110	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10935312	0.80[ASN][1000 genomes]
rs11706018	0.95[ASN][1000 genomes]
rs11707723	0.80[ASN][1000 genomes]
rs11719269	0.80[ASN][1000 genomes]
rs11927735	0.80[ASN][1000 genomes]
rs12629175	0.95[ASN][1000 genomes]
rs12629248	0.95[ASN][1000 genomes]
rs12629439	0.80[ASN][1000 genomes]
rs12630223	0.94[ASN][1000 genomes]
rs12630262	0.95[ASN][1000 genomes]
rs12630333	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12632107	0.83[ASN][1000 genomes]
rs12632125	0.84[ASN][1000 genomes]
rs12632376	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12635620	0.95[ASN][1000 genomes]
rs12636332	0.95[ASN][1000 genomes]
rs12636430	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12637915	0.87[ASN][1000 genomes]
rs13067012	0.82[ASN][1000 genomes]
rs13069778	0.82[ASN][1000 genomes]
rs13075082	0.80[ASN][1000 genomes]
rs13079289	0.80[ASN][1000 genomes]
rs13079437	0.80[ASN][1000 genomes]
rs13089589	0.83[ASN][1000 genomes]
rs13097708	0.80[ASN][1000 genomes]
rs1554564	0.80[ASN][1000 genomes]
rs1554565	0.80[ASN][1000 genomes]
rs2685014	0.96[ASN][1000 genomes]
rs2737737	0.83[ASN][1000 genomes]
rs35781224	0.80[ASN][1000 genomes]
rs4365652	0.81[ASN][1000 genomes]
rs4429660	0.80[ASN][1000 genomes]
rs4894383	0.82[ASN][1000 genomes]
rs4894384	0.82[ASN][1000 genomes]
rs55683392	0.83[ASN][1000 genomes]
rs56729627	0.80[ASN][1000 genomes]
rs57383887	0.83[AMR][1000 genomes]
rs57678437	0.95[ASN][1000 genomes]
rs6775443	0.81[ASN][1000 genomes]
rs6778179	0.80[ASN][1000 genomes]
rs6778394	0.80[ASN][1000 genomes]
rs72976914	0.83[AMR][1000 genomes]
rs73865838	0.95[ASN][1000 genomes]
rs73865842	0.95[ASN][1000 genomes]
rs73868514	0.95[ASN][1000 genomes]
rs73868515	0.95[ASN][1000 genomes]
rs7614968	0.82[ASN][1000 genomes]
rs7615670	0.80[ASN][1000 genomes]
rs7623750	0.83[ASN][1000 genomes]
rs7626912	0.83[ASN][1000 genomes]
rs7627087	0.83[ASN][1000 genomes]
rs7637464	0.80[ASN][1000 genomes]
rs7639780	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3425255	chr3:138852762-138856260	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138849400-138854600	Weak transcription	Pancreas	Pancrea
2	chr3:138853000-138854800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:138853200-138855400	Enhancers	K562	blood

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