Variant report

Variant	rs2737737
Chromosome Location	chr3:138852794-138852795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:138852662..138855349-chr3:139061361..139063361,3	K562	blood:
2	chr3:138846515..138849332-chr3:138852696..138854714,2	K562	blood:
3	chr3:138850568..138852847-chr3:138857740..138859655,2	K562	blood:
4	chr3:138852662..138855349-chr3:139061361..139062870,2	K562	blood:
5	chr3:138852328..138855231-chr3:139061265..139063191,2	MCF-7	breast:
6	chr3:138844509..138846014-chr3:138852462..138854010,2	K562	blood:
7	chr3:138847994..138851900-chr3:138852497..138855700,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175110	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10935312	0.97[ASN][1000 genomes]
rs11707723	0.97[ASN][1000 genomes]
rs11719269	0.97[ASN][1000 genomes]
rs11927735	0.97[ASN][1000 genomes]
rs12629439	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12631401	0.90[ASN][1000 genomes]
rs12632107	1.00[ASN][1000 genomes]
rs12632125	0.99[ASN][1000 genomes]
rs12633735	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12639194	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13067012	0.99[ASN][1000 genomes]
rs13069778	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13075082	0.97[ASN][1000 genomes]
rs13079289	0.97[ASN][1000 genomes]
rs13079437	0.97[ASN][1000 genomes]
rs13089589	1.00[ASN][1000 genomes]
rs13097708	0.97[ASN][1000 genomes]
rs1554563	0.96[ASN][1000 genomes]
rs1554564	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1554565	0.97[ASN][1000 genomes]
rs35781224	0.97[ASN][1000 genomes]
rs4365652	0.97[ASN][1000 genomes]
rs4429660	0.97[ASN][1000 genomes]
rs4894383	0.99[ASN][1000 genomes]
rs4894384	0.99[ASN][1000 genomes]
rs56729627	0.97[ASN][1000 genomes]
rs57272617	0.83[ASN][1000 genomes]
rs6775443	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6778179	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778394	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7426421	0.95[ASN][1000 genomes]
rs7614968	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7615670	0.97[ASN][1000 genomes]
rs7623750	1.00[ASN][1000 genomes]
rs7626912	1.00[ASN][1000 genomes]
rs7627087	1.00[ASN][1000 genomes]
rs7637464	0.97[ASN][1000 genomes]
rs7639780	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3425255	chr3:138852762-138856260	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138847400-138853000	Weak transcription	HMEC	breast
2	chr3:138849400-138854600	Weak transcription	Pancreas	Pancrea
3	chr3:138851200-138853200	Weak transcription	K562	blood
4	chr3:138851600-138853000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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