Variant report

Variant	rs12639194
Chromosome Location	chr3:138875054-138875055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10935312	0.93[ASN][1000 genomes]
rs11707723	0.93[ASN][1000 genomes]
rs11719269	0.93[ASN][1000 genomes]
rs11927735	0.93[ASN][1000 genomes]
rs12629439	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12631401	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12632107	0.91[ASN][1000 genomes]
rs12632125	0.90[ASN][1000 genomes]
rs13067012	0.90[ASN][1000 genomes]
rs13069778	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13075082	0.93[ASN][1000 genomes]
rs13079289	0.93[ASN][1000 genomes]
rs13079437	0.93[ASN][1000 genomes]
rs13089589	0.91[ASN][1000 genomes]
rs13097708	0.93[ASN][1000 genomes]
rs1554563	0.92[ASN][1000 genomes]
rs1554564	0.93[ASN][1000 genomes]
rs1554565	0.93[ASN][1000 genomes]
rs2737737	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35781224	0.93[ASN][1000 genomes]
rs4365652	0.91[ASN][1000 genomes]
rs4429660	0.93[ASN][1000 genomes]
rs4894383	0.90[ASN][1000 genomes]
rs4894384	0.92[ASN][1000 genomes]
rs56729627	0.93[ASN][1000 genomes]
rs6775443	0.92[ASN][1000 genomes]
rs6778179	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6778394	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7426421	0.92[ASN][1000 genomes]
rs7614968	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7615670	0.93[ASN][1000 genomes]
rs7623750	0.91[ASN][1000 genomes]
rs7626912	0.91[ASN][1000 genomes]
rs7627087	0.91[ASN][1000 genomes]
rs7637464	0.93[ASN][1000 genomes]
rs7639780	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138872200-138875600	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:138873400-138876000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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