Variant report
| Variant | rs12631401 |
|---|---|
| Chromosome Location | chr3:138875058-138875059 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10935312 | 0.92[ASN][1000 genomes] |
| rs11707723 | 0.92[ASN][1000 genomes] |
| rs11719269 | 0.92[ASN][1000 genomes] |
| rs11927735 | 0.92[ASN][1000 genomes] |
| rs12629439 | 0.92[ASN][1000 genomes] |
| rs12632107 | 0.90[ASN][1000 genomes] |
| rs12632125 | 0.88[ASN][1000 genomes] |
| rs12639194 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13067012 | 0.88[ASN][1000 genomes] |
| rs13069778 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13075082 | 0.92[ASN][1000 genomes] |
| rs13079289 | 0.92[ASN][1000 genomes] |
| rs13079437 | 0.92[ASN][1000 genomes] |
| rs13089589 | 0.90[ASN][1000 genomes] |
| rs13097708 | 0.92[ASN][1000 genomes] |
| rs1554563 | 0.91[ASN][1000 genomes] |
| rs1554564 | 0.92[ASN][1000 genomes] |
| rs1554565 | 0.92[ASN][1000 genomes] |
| rs2737737 | 0.90[ASN][1000 genomes] |
| rs35781224 | 0.92[ASN][1000 genomes] |
| rs4365652 | 0.90[ASN][1000 genomes] |
| rs4429660 | 0.92[ASN][1000 genomes] |
| rs4894383 | 0.89[ASN][1000 genomes] |
| rs4894384 | 0.91[ASN][1000 genomes] |
| rs56729627 | 0.92[ASN][1000 genomes] |
| rs6775443 | 0.91[ASN][1000 genomes] |
| rs6778179 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6778394 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7426421 | 0.90[ASN][1000 genomes] |
| rs7614968 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7615670 | 0.92[ASN][1000 genomes] |
| rs7623750 | 0.90[ASN][1000 genomes] |
| rs7626912 | 0.90[ASN][1000 genomes] |
| rs7627087 | 0.90[ASN][1000 genomes] |
| rs7637464 | 0.92[ASN][1000 genomes] |
| rs7639780 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829736 | chr3:138737352-138934758 | Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005167 | chr3:138854490-138988546 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv536728 | chr3:138854490-138988546 | Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:138872200-138875600 | Weak transcription | Brain Hippocampus Middle | brain |
| 2 | chr3:138873400-138876000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
