Variant report
| Variant | rs12632205 |
|---|---|
| Chromosome Location | chr3:89013955-89013956 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11128061 | 0.82[AMR][1000 genomes] |
| rs13321295 | 0.84[AMR][1000 genomes] |
| rs17026511 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35357934 | 0.86[AMR][1000 genomes] |
| rs4241402 | 0.82[AMR][1000 genomes] |
| rs4241403 | 0.82[AMR][1000 genomes] |
| rs4301012 | 0.84[AMR][1000 genomes] |
| rs4855790 | 0.82[AMR][1000 genomes] |
| rs4855811 | 0.82[AMR][1000 genomes] |
| rs6551372 | 0.82[AMR][1000 genomes] |
| rs6773197 | 0.82[AMR][1000 genomes] |
| rs6792929 | 0.82[AMR][1000 genomes] |
| rs6805311 | 0.82[AMR][1000 genomes] |
| rs7430461 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7434092 | 0.84[AMR][1000 genomes] |
| rs7615019 | 0.84[AMR][1000 genomes] |
| rs7621168 | 0.82[AMR][1000 genomes] |
| rs7625470 | 0.82[AMR][1000 genomes] |
| rs7630500 | 0.80[AMR][1000 genomes] |
| rs7649207 | 0.91[AMR][1000 genomes] |
| rs9284815 | 0.93[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9827227 | 0.80[AMR][1000 genomes] |
| rs9869106 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834759 | chr3:88901229-89105366 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002060 | chr3:88984502-89047104 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv536637 | chr3:88984502-89047104 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12632205 | C3orf38 | cis | parietal | SCAN |
| rs12632205 | EPHA3 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:89009200-89014600 | Weak transcription | HSMM | muscle |
