Variant report

Variant	rs7649207
Chromosome Location	chr3:88978793-88978794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12632205	0.91[AMR][1000 genomes]
rs13321295	0.81[AMR][1000 genomes]
rs17026511	0.91[AMR][1000 genomes]
rs35357934	0.83[AMR][1000 genomes]
rs4301012	0.81[AMR][1000 genomes]
rs71618704	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7430461	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7434092	0.81[AMR][1000 genomes]
rs7615019	0.81[AMR][1000 genomes]
rs9284815	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2763285	chr3:88943041-88985151	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88978600-88979000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:88978600-88979200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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