Variant report

Variant	rs12632661
Chromosome Location	chr3:157240171-157240172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11915662	1.00[EUR][1000 genomes]
rs12634308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637783	1.00[EUR][1000 genomes]
rs12638497	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1443394	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1443396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827850	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4588317	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9790270	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157221800-157244800	Weak transcription	NH-A	brain
2	chr3:157222600-157241800	Weak transcription	HSMM	muscle
3	chr3:157227400-157241600	Weak transcription	Osteobl	bone
4	chr3:157237800-157240600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157239000-157243200	Strong transcription	HUVEC	blood vessel
6	chr3:157239400-157240400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:157239800-157240600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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