Variant report

Variant	rs12632826
Chromosome Location	chr3:17656856-17656857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10433559	0.83[EUR][1000 genomes]
rs73042831	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:17633000-17667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:17633600-17659600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:17634200-17659800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:17639200-17676800	Weak transcription	Ovary	ovary
8	chr3:17641000-17659800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:17641400-17659800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:17641400-17660200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:17641400-17663000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:17643800-17659800	Weak transcription	Primary B cells from cord blood	blood
13	chr3:17646600-17659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:17647000-17659200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:17647000-17670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:17647400-17673800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:17647800-17659800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:17647800-17663200	Weak transcription	A549	lung
19	chr3:17647800-17673000	Weak transcription	Psoas Muscle	Psoas
20	chr3:17648000-17659600	Weak transcription	Pancreas	Pancrea
21	chr3:17648000-17660000	Weak transcription	Right Ventricle	heart
22	chr3:17650000-17658800	Weak transcription	Primary T cells from cord blood	blood
23	chr3:17650800-17681200	Weak transcription	Aorta	Aorta
24	chr3:17651400-17673200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:17652000-17659800	Weak transcription	Liver	Liver
26	chr3:17652000-17659800	Weak transcription	Gastric	stomach
27	chr3:17652000-17660000	Weak transcription	Dnd41	blood
28	chr3:17652000-17661000	Weak transcription	HepG2	liver
29	chr3:17655600-17664600	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:17655800-17659800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:17655800-17660000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:17656000-17659400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:17656000-17659800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:17656000-17681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr3:17656400-17659000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:17656400-17659000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:17656400-17659400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:17656800-17659400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:17656800-17659800	Weak transcription	Brain Anterior Caudate	brain

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