Variant report

Variant	rs12632890
Chromosome Location	chr3:110372956-110372957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12629161	1.00[AMR][1000 genomes]
rs12629776	0.98[ASN][1000 genomes]
rs12630230	0.84[ASN][1000 genomes]
rs12631175	0.98[ASN][1000 genomes]
rs12631414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12635877	0.98[ASN][1000 genomes]
rs12635961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12636391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12638390	0.98[ASN][1000 genomes]
rs12638993	0.98[ASN][1000 genomes]
rs12639567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1512523	0.87[ASN][1000 genomes]
rs1512525	0.87[ASN][1000 genomes]
rs1512526	0.87[ASN][1000 genomes]
rs1512527	0.87[ASN][1000 genomes]
rs1512528	0.87[ASN][1000 genomes]
rs1533194	0.87[ASN][1000 genomes]
rs1533195	0.87[ASN][1000 genomes]
rs1599573	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1849368	0.87[ASN][1000 genomes]
rs2399360	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6765964	0.87[ASN][1000 genomes]
rs7629191	0.81[JPT][hapmap]
rs7633936	0.81[JPT][hapmap]
rs7651197	0.95[ASN][1000 genomes]
rs907657	0.87[ASN][1000 genomes]
rs907658	0.87[ASN][1000 genomes]
rs9812950	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110370200-110375400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:110370600-110373200	Weak transcription	Fetal Kidney	kidney
3	chr3:110372200-110373400	Enhancers	Fetal Intestine Large	intestine
4	chr3:110372200-110373800	Enhancers	Fetal Intestine Small	intestine
5	chr3:110372200-110374000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr3:110372400-110373400	Weak transcription	HepG2	liver
7	chr3:110372600-110373200	Enhancers	Liver	Liver
8	chr3:110372800-110373800	Active TSS	Duodenum Mucosa	Duodenum

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