Variant report

Variant	rs12633060
Chromosome Location	chr3:132924276-132924277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10935053	0.82[ASN][1000 genomes]
rs11920436	0.81[ASN][1000 genomes]
rs12634330	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1542255	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1628942	0.82[EUR][1000 genomes]
rs2887628	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3953104	0.97[ASN][1000 genomes]
rs4306857	0.82[ASN][1000 genomes]
rs4308273	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62280349	0.81[ASN][1000 genomes]
rs6439392	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6791152	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6797056	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6809033	0.80[ASN][1000 genomes]
rs7638408	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132919400-132925600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:132919400-132928600	Weak transcription	HSMMtube	muscle
3	chr3:132919600-132929600	Weak transcription	Fetal Lung	lung
4	chr3:132922800-132925400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:132923400-132928600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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