Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10446319	0.80[ASN][1000 genomes]
rs10446320	0.80[ASN][1000 genomes]
rs11708546	0.80[ASN][1000 genomes]
rs11711460	0.80[ASN][1000 genomes]
rs11712573	0.82[ASN][1000 genomes]
rs11916334	0.80[ASN][1000 genomes]
rs12633060	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12634330	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637903	0.82[ASN][1000 genomes]
rs13063196	0.82[ASN][1000 genomes]
rs1542255	0.96[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2887628	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3953104	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4308273	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4854577	0.80[ASN][1000 genomes]
rs55856984	0.80[ASN][1000 genomes]
rs58238138	0.82[ASN][1000 genomes]
rs60961447	0.81[ASN][1000 genomes]
rs62280351	0.82[ASN][1000 genomes]
rs62280352	0.82[ASN][1000 genomes]
rs62280355	0.81[ASN][1000 genomes]
rs6439392	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797056	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617947	0.80[ASN][1000 genomes]
rs7627254	0.80[ASN][1000 genomes]
rs7638408	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9968195	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132943200-132948000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:132943600-132948800	Weak transcription	Fetal Brain Female	brain

Quick Search: