Variant report

Variant	rs9968195
Chromosome Location	chr3:132936841-132936842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10446319	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10446320	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10935053	0.84[CHB][hapmap]
rs10935058	0.83[JPT][hapmap]
rs11706654	0.89[JPT][hapmap]
rs11708546	0.80[ASN][1000 genomes]
rs11710126	0.85[JPT][hapmap]
rs11711460	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11712573	0.82[ASN][1000 genomes]
rs11916334	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs11919147	0.83[JPT][hapmap]
rs11919306	0.83[JPT][hapmap]
rs11922891	0.83[JPT][hapmap]
rs11925242	0.85[JPT][hapmap]
rs12630350	0.83[JPT][hapmap]
rs12633060	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12634330	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637903	0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs13063196	0.82[ASN][1000 genomes]
rs1355776	0.84[JPT][hapmap]
rs1513373	0.90[JPT][hapmap]
rs1542255	0.95[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840105	0.83[JPT][hapmap]
rs16840179	0.83[JPT][hapmap]
rs16840271	0.90[JPT][hapmap]
rs1708368	0.83[JPT][hapmap]
rs1949220	0.85[JPT][hapmap]
rs1992994	0.83[JPT][hapmap]
rs2060639	0.83[JPT][hapmap]
rs2887628	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3849404	0.85[JPT][hapmap]
rs3849405	0.84[JPT][hapmap]
rs3953104	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4089503	0.84[JPT][hapmap]
rs4306857	0.83[CHB][hapmap]
rs4308273	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4459903	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4600815	0.83[JPT][hapmap]
rs4854576	0.83[JPT][hapmap]
rs4854577	0.80[ASN][1000 genomes]
rs4854713	0.85[JPT][hapmap]
rs55856984	0.80[ASN][1000 genomes]
rs58238138	0.82[ASN][1000 genomes]
rs60961447	0.81[ASN][1000 genomes]
rs62280351	0.82[ASN][1000 genomes]
rs62280352	0.82[ASN][1000 genomes]
rs62280355	0.81[ASN][1000 genomes]
rs6439392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774247	0.84[JPT][hapmap]
rs6791152	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797056	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809033	0.84[CHB][hapmap]
rs7617947	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7627254	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7636781	0.84[JPT][hapmap]
rs7638408	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7644980	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs769097	0.83[JPT][hapmap]
rs938238	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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