Variant report

Variant	rs1263362
Chromosome Location	chr4:2894589-2894590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:2892098..2895386-chr4:2900898..2904479,3	K562	blood:
2	chr4:2893217..2895125-chr4:2907494..2911378,3	MCF-7	breast:
3	chr4:2888568..2890455-chr4:2892356..2894749,2	K562	blood:
4	chr4:2892123..2895002-chr4:2897727..2899403,2	K562	blood:

Variant related genes	Relation type
ENSG00000087274	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16843169	0.90[AFR][1000 genomes]
rs16843539	0.80[AFR][1000 genomes]
rs34585460	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2870200-2914000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2871200-2896000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:2871200-2900600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:2874200-2900000	Weak transcription	Hela-S3	cervix
5	chr4:2876600-2919200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:2877200-2919400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:2880600-2915000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:2881000-2895600	Weak transcription	Right Atrium	heart
9	chr4:2883600-2918600	Strong transcription	Fetal Stomach	stomach
10	chr4:2888200-2899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:2888400-2895800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:2888600-2895200	Weak transcription	Colonic Mucosa	Colon
13	chr4:2888600-2895200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:2888600-2895400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:2888600-2895400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:2888600-2895400	Weak transcription	HMEC	breast
17	chr4:2888600-2896200	Weak transcription	Ovary	ovary
18	chr4:2888600-2896200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:2888600-2896400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:2888600-2896400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:2888600-2896600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:2888600-2896600	Weak transcription	Small Intestine	intestine
23	chr4:2888600-2897200	Weak transcription	NHEK	skin
24	chr4:2888600-2899600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr4:2888600-2899800	Weak transcription	Fetal Brain Male	brain
26	chr4:2888800-2895400	Weak transcription	Fetal Kidney	kidney
27	chr4:2888800-2896400	Weak transcription	NHLF	lung
28	chr4:2888800-2899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:2889000-2895400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr4:2889000-2895400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:2889000-2895600	Weak transcription	GM12878-XiMat	blood
32	chr4:2889000-2895600	Weak transcription	K562	blood
33	chr4:2889200-2895600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:2889200-2899400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:2889400-2895000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:2889400-2895800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:2889600-2894600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:2889600-2894800	Weak transcription	Fetal Heart	heart
39	chr4:2889600-2895000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:2889600-2895200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:2889600-2895200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:2889600-2895400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:2889600-2895400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr4:2889600-2895400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:2889600-2895400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:2889600-2895400	Weak transcription	HepG2	liver
47	chr4:2889600-2895600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:2889600-2895600	Weak transcription	Liver	Liver
49	chr4:2889600-2896000	Weak transcription	Pancreas	Pancrea
50	chr4:2889600-2896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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