Variant report

Variant	rs34585460
Chromosome Location	chr4:2895933-2895934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:2895551-2896007	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ADD1	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1034400	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488838	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1263331	1.00[ASN][1000 genomes]
rs1263362	0.90[AFR][1000 genomes]
rs1574473	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843451	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843454	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843481	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843500	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843535	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843539	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843553	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005451	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2857845	1.00[ASN][1000 genomes]
rs34120252	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34241425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34550139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34743278	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34745961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34945392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35445752	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35508581	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35893718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35913891	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36038921	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41528047	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56975682	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57155428	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57174035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57557041	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57763208	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58059873	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58132256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58196520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58731679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58758786	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58928665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59426248	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59786983	1.00[ASN][1000 genomes]
rs59790260	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59798370	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60169711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61117606	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61339714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2870200-2914000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2871200-2896000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:2871200-2900600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:2874200-2900000	Weak transcription	Hela-S3	cervix
5	chr4:2876600-2919200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:2877200-2919400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:2880600-2915000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:2883600-2918600	Strong transcription	Fetal Stomach	stomach
9	chr4:2888200-2899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:2888600-2896200	Weak transcription	Ovary	ovary
11	chr4:2888600-2896200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:2888600-2896400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:2888600-2896400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:2888600-2896600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:2888600-2896600	Weak transcription	Small Intestine	intestine
16	chr4:2888600-2897200	Weak transcription	NHEK	skin
17	chr4:2888600-2899600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:2888600-2899800	Weak transcription	Fetal Brain Male	brain
19	chr4:2888800-2896400	Weak transcription	NHLF	lung
20	chr4:2888800-2899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:2889200-2899400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:2889600-2896000	Weak transcription	Pancreas	Pancrea
23	chr4:2889600-2896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:2889600-2896400	Weak transcription	Aorta	Aorta
25	chr4:2889600-2896800	Weak transcription	Esophagus	oesophagus
26	chr4:2889600-2896800	Weak transcription	Spleen	Spleen
27	chr4:2889600-2898400	Weak transcription	HSMM	muscle
28	chr4:2889600-2898600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:2889600-2900200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr4:2889800-2896600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:2890000-2900400	Weak transcription	Psoas Muscle	Psoas
32	chr4:2890400-2918000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:2891200-2896400	Weak transcription	HSMMtube	muscle
34	chr4:2891400-2897000	Weak transcription	A549	lung
35	chr4:2892400-2896000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:2893000-2907800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:2893000-2919400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:2893200-2896400	Weak transcription	Gastric	stomach
39	chr4:2893200-2899000	Strong transcription	Brain Germinal Matrix	brain
40	chr4:2893200-2907600	Strong transcription	Primary T cells from cord blood	blood
41	chr4:2893200-2907600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr4:2893200-2914000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:2893200-2918800	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr4:2893200-2918800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr4:2893200-2919200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr4:2893200-2932600	Strong transcription	Fetal Thymus	thymus
47	chr4:2893400-2915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:2893400-2918800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:2893400-2919000	Strong transcription	Fetal Muscle Leg	muscle
50	chr4:2893600-2896200	Weak transcription	NHDF-Ad	bronchial

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