Variant report

Variant	rs12638307
Chromosome Location	chr3:161812348-161812349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1119975	0.91[ASN][1000 genomes]
rs1119976	0.91[ASN][1000 genomes]
rs1119977	0.89[ASN][1000 genomes]
rs11922869	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12630366	0.83[ASN][1000 genomes]
rs12631615	0.91[ASN][1000 genomes]
rs12637049	0.91[ASN][1000 genomes]
rs12638402	0.82[ASN][1000 genomes]
rs12638648	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12638716	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13067265	0.89[ASN][1000 genomes]
rs13067435	0.87[ASN][1000 genomes]
rs13067436	0.89[ASN][1000 genomes]
rs13071617	0.82[ASN][1000 genomes]
rs13080578	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13085452	0.91[ASN][1000 genomes]
rs13085482	0.91[ASN][1000 genomes]
rs13086633	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13087182	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13090130	0.91[ASN][1000 genomes]
rs13090291	0.89[ASN][1000 genomes]
rs13097361	0.91[ASN][1000 genomes]
rs13100661	0.85[ASN][1000 genomes]
rs1397236	0.85[ASN][1000 genomes]
rs1397240	0.85[ASN][1000 genomes]
rs1397241	0.85[ASN][1000 genomes]
rs1397242	0.85[ASN][1000 genomes]
rs1397243	0.85[ASN][1000 genomes]
rs1397244	0.85[ASN][1000 genomes]
rs1397245	0.85[ASN][1000 genomes]
rs1510340	0.83[ASN][1000 genomes]
rs16834360	0.85[ASN][1000 genomes]
rs1912454	0.83[ASN][1000 genomes]
rs2102508	0.89[ASN][1000 genomes]
rs2102509	0.89[ASN][1000 genomes]
rs28413956	0.83[ASN][1000 genomes]
rs34793869	0.85[ASN][1000 genomes]
rs34869298	0.89[ASN][1000 genomes]
rs34880574	0.91[ASN][1000 genomes]
rs34922593	0.85[ASN][1000 genomes]
rs35282795	0.85[ASN][1000 genomes]
rs35298688	0.89[ASN][1000 genomes]
rs35512559	0.85[ASN][1000 genomes]
rs35648700	0.89[ASN][1000 genomes]
rs35888322	0.89[ASN][1000 genomes]
rs4323020	0.81[ASN][1000 genomes]
rs4450831	0.83[ASN][1000 genomes]
rs4459917	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4498059	0.83[ASN][1000 genomes]
rs4498060	0.83[ASN][1000 genomes]
rs4611839	0.89[ASN][1000 genomes]
rs4856665	0.83[ASN][1000 genomes]
rs4856669	0.89[ASN][1000 genomes]
rs4856744	0.89[ASN][1000 genomes]
rs4856763	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4856765	0.91[ASN][1000 genomes]
rs56210893	0.89[ASN][1000 genomes]
rs56315604	0.84[ASN][1000 genomes]
rs56400336	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278873	0.91[ASN][1000 genomes]
rs62278939	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6762210	0.89[ASN][1000 genomes]
rs6776232	0.89[ASN][1000 genomes]
rs6779000	0.84[ASN][1000 genomes]
rs6779195	0.89[ASN][1000 genomes]
rs6789071	0.85[ASN][1000 genomes]
rs6789427	0.89[ASN][1000 genomes]
rs6791872	0.89[ASN][1000 genomes]
rs6796554	0.85[ASN][1000 genomes]
rs6800261	0.91[ASN][1000 genomes]
rs71635264	0.80[ASN][1000 genomes]
rs7432475	0.89[ASN][1000 genomes]
rs7615800	0.89[ASN][1000 genomes]
rs7637893	0.89[ASN][1000 genomes]
rs907079	0.83[ASN][1000 genomes]
rs907080	0.83[ASN][1000 genomes]
rs951475	0.85[ASN][1000 genomes]
rs9840976	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877713	chr3:161807012-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv877714	chr3:161807012-161854219	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv877715	chr3:161807012-161862628	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv12869	chr3:161808602-161816680	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161812000-161812600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:161812200-161812600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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