Variant report

Variant	rs4856763
Chromosome Location	chr3:161831675-161831676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1119975	0.86[ASN][1000 genomes]
rs1119976	0.86[ASN][1000 genomes]
rs1119977	0.85[ASN][1000 genomes]
rs11922869	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631615	0.86[ASN][1000 genomes]
rs12637049	0.86[ASN][1000 genomes]
rs12638307	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12638648	0.86[ASN][1000 genomes]
rs12638716	0.86[ASN][1000 genomes]
rs13067265	0.84[ASN][1000 genomes]
rs13067435	0.83[ASN][1000 genomes]
rs13067436	0.84[ASN][1000 genomes]
rs13080578	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13085452	0.86[ASN][1000 genomes]
rs13085482	0.86[ASN][1000 genomes]
rs13086633	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087182	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13090130	0.86[ASN][1000 genomes]
rs13090291	0.85[ASN][1000 genomes]
rs13097361	0.86[ASN][1000 genomes]
rs13100661	0.81[ASN][1000 genomes]
rs1397236	0.81[ASN][1000 genomes]
rs1397240	0.81[ASN][1000 genomes]
rs1397241	0.81[ASN][1000 genomes]
rs1397242	0.81[ASN][1000 genomes]
rs1397243	0.81[ASN][1000 genomes]
rs1397244	0.81[ASN][1000 genomes]
rs1397245	0.81[ASN][1000 genomes]
rs16834360	0.81[ASN][1000 genomes]
rs2102508	0.85[ASN][1000 genomes]
rs2102509	0.85[ASN][1000 genomes]
rs34793869	0.81[ASN][1000 genomes]
rs34869298	0.85[ASN][1000 genomes]
rs34880574	0.86[ASN][1000 genomes]
rs34922593	0.81[ASN][1000 genomes]
rs35282795	0.81[ASN][1000 genomes]
rs35298688	0.85[ASN][1000 genomes]
rs35512559	0.81[ASN][1000 genomes]
rs35648700	0.85[ASN][1000 genomes]
rs35888322	0.85[ASN][1000 genomes]
rs4459917	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611839	0.85[ASN][1000 genomes]
rs4856669	0.85[ASN][1000 genomes]
rs4856744	0.85[ASN][1000 genomes]
rs4856765	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56210893	0.85[ASN][1000 genomes]
rs56400336	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62278873	0.86[ASN][1000 genomes]
rs62278939	0.84[ASN][1000 genomes]
rs6762210	0.85[ASN][1000 genomes]
rs6776232	0.85[ASN][1000 genomes]
rs6779000	0.80[ASN][1000 genomes]
rs6779195	0.85[ASN][1000 genomes]
rs6789071	0.81[ASN][1000 genomes]
rs6789427	0.85[ASN][1000 genomes]
rs6791872	0.85[ASN][1000 genomes]
rs6796554	0.81[ASN][1000 genomes]
rs6800261	0.86[ASN][1000 genomes]
rs7432475	0.85[ASN][1000 genomes]
rs7615800	0.85[ASN][1000 genomes]
rs7637893	0.85[ASN][1000 genomes]
rs951475	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877713	chr3:161807012-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv877714	chr3:161807012-161854219	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv877715	chr3:161807012-161862628	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv877716	chr3:161817368-161847016	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2753414	chr3:161826690-161935978	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877717	chr3:161827760-161864213	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
9	nsv519130	chr3:161829158-161832223	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	nsv877718	chr3:161829492-161878713	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161829400-161834200	Weak transcription	Brain Germinal Matrix	brain
2	chr3:161830000-161834200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:161831400-161834000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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