Variant report

Variant	rs12638958
Chromosome Location	chr3:97942881-97942882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 299 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:282)

rs_ID	r²[population]
rs10212222	0.81[JPT][hapmap]
rs1024053	0.87[ASN][1000 genomes]
rs1024056	0.87[ASN][1000 genomes]
rs1123188	0.89[EUR][1000 genomes]
rs11706357	0.81[ASN][1000 genomes]
rs11710803	0.88[ASN][1000 genomes]
rs11711844	0.80[ASN][1000 genomes]
rs11715052	0.88[ASN][1000 genomes]
rs11715218	0.87[ASN][1000 genomes]
rs11715921	0.81[ASN][1000 genomes]
rs11716683	0.80[ASN][1000 genomes]
rs11717559	0.80[ASN][1000 genomes]
rs11718318	0.88[ASN][1000 genomes]
rs11719433	0.80[ASN][1000 genomes]
rs11720006	0.81[ASN][1000 genomes]
rs11720576	0.88[ASN][1000 genomes]
rs11914600	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs11923541	0.88[ASN][1000 genomes]
rs12330386	0.86[ASN][1000 genomes]
rs12489167	0.85[ASN][1000 genomes]
rs12489398	0.86[ASN][1000 genomes]
rs12490755	0.85[ASN][1000 genomes]
rs12498051	0.85[ASN][1000 genomes]
rs12631405	0.90[EUR][1000 genomes]
rs12633126	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12636120	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs12636571	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12636614	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637378	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12638463	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12638881	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12639163	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12695682	0.85[ASN][1000 genomes]
rs12695683	0.86[ASN][1000 genomes]
rs12695684	0.86[ASN][1000 genomes]
rs13059290	0.85[ASN][1000 genomes]
rs13060486	0.83[ASN][1000 genomes]
rs13060569	0.85[ASN][1000 genomes]
rs13060763	0.85[ASN][1000 genomes]
rs13061180	0.85[ASN][1000 genomes]
rs13061364	0.83[ASN][1000 genomes]
rs13064891	0.83[ASN][1000 genomes]
rs13065259	0.83[ASN][1000 genomes]
rs13067366	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13067607	0.83[ASN][1000 genomes]
rs13071373	0.81[ASN][1000 genomes]
rs13071754	0.82[ASN][1000 genomes]
rs13080640	0.85[ASN][1000 genomes]
rs13081420	0.88[ASN][1000 genomes]
rs13083770	0.83[ASN][1000 genomes]
rs13084823	0.85[ASN][1000 genomes]
rs13084986	0.85[ASN][1000 genomes]
rs13088168	0.88[ASN][1000 genomes]
rs13088324	0.80[ASN][1000 genomes]
rs13088529	0.83[ASN][1000 genomes]
rs13089594	0.83[ASN][1000 genomes]
rs13090539	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13093005	0.81[ASN][1000 genomes]
rs13093180	0.83[ASN][1000 genomes]
rs13094850	0.81[ASN][1000 genomes]
rs13095222	0.83[ASN][1000 genomes]
rs13099950	0.85[ASN][1000 genomes]
rs13099965	0.81[ASN][1000 genomes]
rs13321188	0.86[ASN][1000 genomes]
rs13433842	0.86[ASN][1000 genomes]
rs13433847	0.87[ASN][1000 genomes]
rs1391151	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1532464	0.85[ASN][1000 genomes]
rs1532465	0.87[ASN][1000 genomes]
rs1548142	0.88[ASN][1000 genomes]
rs1587280	0.87[ASN][1000 genomes]
rs1587281	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16839400	0.88[ASN][1000 genomes]
rs16839427	0.83[MEX][hapmap]
rs16839434	0.88[ASN][1000 genomes]
rs16839438	0.88[ASN][1000 genomes]
rs16839446	0.88[ASN][1000 genomes]
rs1846078	0.88[ASN][1000 genomes]
rs1846081	0.90[EUR][1000 genomes]
rs1908993	0.80[ASN][1000 genomes]
rs1908994	0.81[ASN][1000 genomes]
rs1908995	0.81[ASN][1000 genomes]
rs1908997	0.88[ASN][1000 genomes]
rs1908998	0.88[ASN][1000 genomes]
rs1908999	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1960452	0.87[ASN][1000 genomes]
rs2007156	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2007160	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2047389	0.88[ASN][1000 genomes]
rs2047390	0.88[ASN][1000 genomes]
rs2047391	0.85[ASN][1000 genomes]
rs2047392	0.85[ASN][1000 genomes]
rs2047393	0.84[ASN][1000 genomes]
rs2088408	0.88[ASN][1000 genomes]
rs2132890	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132891	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2291810	0.85[ASN][1000 genomes]
rs2316299	0.88[ASN][1000 genomes]
rs2316300	0.88[ASN][1000 genomes]
rs28481861	0.88[ASN][1000 genomes]
rs28484994	0.86[ASN][1000 genomes]
rs28678410	0.88[ASN][1000 genomes]
rs2873119	0.88[ASN][1000 genomes]
rs2873120	0.88[ASN][1000 genomes]
rs2873121	0.88[ASN][1000 genomes]
rs34043420	0.80[ASN][1000 genomes]
rs34072146	0.83[ASN][1000 genomes]
rs34111209	0.88[ASN][1000 genomes]
rs34137690	0.83[ASN][1000 genomes]
rs34156823	0.90[EUR][1000 genomes]
rs34174679	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34225419	0.80[ASN][1000 genomes]
rs34236895	0.83[ASN][1000 genomes]
rs34290035	0.83[ASN][1000 genomes]
rs34305303	0.82[ASN][1000 genomes]
rs34332524	0.82[ASN][1000 genomes]
rs34424109	0.83[ASN][1000 genomes]
rs34428635	0.83[ASN][1000 genomes]
rs34448974	0.85[ASN][1000 genomes]
rs34554465	0.83[ASN][1000 genomes]
rs34573833	0.88[ASN][1000 genomes]
rs34637074	0.83[ASN][1000 genomes]
rs34745979	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34776005	0.83[ASN][1000 genomes]
rs34800460	0.83[ASN][1000 genomes]
rs34818739	0.80[ASN][1000 genomes]
rs34826958	0.87[ASN][1000 genomes]
rs34859603	0.85[ASN][1000 genomes]
rs34918234	0.88[ASN][1000 genomes]
rs34924704	0.83[ASN][1000 genomes]
rs34931487	0.81[ASN][1000 genomes]
rs35025561	0.88[ASN][1000 genomes]
rs35042029	0.81[ASN][1000 genomes]
rs35100128	0.83[ASN][1000 genomes]
rs35122376	0.88[ASN][1000 genomes]
rs35127256	0.81[ASN][1000 genomes]
rs35200215	0.88[ASN][1000 genomes]
rs35221063	0.85[ASN][1000 genomes]
rs35239283	0.80[ASN][1000 genomes]
rs35292867	0.83[ASN][1000 genomes]
rs35327048	0.88[ASN][1000 genomes]
rs35399810	0.80[ASN][1000 genomes]
rs35515951	0.82[ASN][1000 genomes]
rs35568466	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35594582	0.82[ASN][1000 genomes]
rs35694938	0.82[ASN][1000 genomes]
rs35808942	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35847759	0.82[ASN][1000 genomes]
rs35907125	0.88[ASN][1000 genomes]
rs35915850	0.83[ASN][1000 genomes]
rs35939420	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36037993	0.80[ASN][1000 genomes]
rs36153673	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3828452	0.81[ASN][1000 genomes]
rs3828453	0.81[ASN][1000 genomes]
rs3828454	0.81[ASN][1000 genomes]
rs3828456	0.81[ASN][1000 genomes]
rs3828457	0.81[ASN][1000 genomes]
rs3828458	0.81[ASN][1000 genomes]
rs3828459	0.81[ASN][1000 genomes]
rs3828460	0.81[ASN][1000 genomes]
rs3828461	0.81[ASN][1000 genomes]
rs4133320	0.81[JPT][hapmap]
rs4133321	0.81[JPT][hapmap]
rs4264769	0.88[ASN][1000 genomes]
rs4286458	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4334683	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4365665	0.87[ASN][1000 genomes]
rs4388016	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4452365	0.88[ASN][1000 genomes]
rs4463010	0.87[ASN][1000 genomes]
rs4463011	0.87[ASN][1000 genomes]
rs4464499	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4482695	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4546179	0.84[ASN][1000 genomes]
rs4550855	0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs4621367	0.87[ASN][1000 genomes]
rs4624601	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4857080	0.83[ASN][1000 genomes]
rs4857081	0.83[ASN][1000 genomes]
rs4857082	0.83[ASN][1000 genomes]
rs4857342	0.83[ASN][1000 genomes]
rs4857344	0.88[ASN][1000 genomes]
rs4857345	0.88[ASN][1000 genomes]
rs4857346	0.88[ASN][1000 genomes]
rs4857347	0.88[ASN][1000 genomes]
rs4857348	0.88[ASN][1000 genomes]
rs4857349	0.88[ASN][1000 genomes]
rs4857350	0.88[ASN][1000 genomes]
rs4857351	0.87[ASN][1000 genomes]
rs4857354	0.87[ASN][1000 genomes]
rs5000372	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs5000373	0.81[ASN][1000 genomes]
rs5000376	0.88[ASN][1000 genomes]
rs5000377	0.88[ASN][1000 genomes]
rs55802233	0.83[ASN][1000 genomes]
rs56001215	0.83[ASN][1000 genomes]
rs56206401	0.84[ASN][1000 genomes]
rs57420324	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58188940	0.85[ASN][1000 genomes]
rs58407128	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58605422	0.83[ASN][1000 genomes]
rs59598356	0.83[ASN][1000 genomes]
rs61264422	0.80[ASN][1000 genomes]
rs62267190	0.88[ASN][1000 genomes]
rs62267191	0.88[ASN][1000 genomes]
rs62267192	0.88[ASN][1000 genomes]
rs62267258	0.90[EUR][1000 genomes]
rs62267772	0.83[ASN][1000 genomes]
rs62267798	0.82[ASN][1000 genomes]
rs62267799	0.82[ASN][1000 genomes]
rs62267800	0.82[ASN][1000 genomes]
rs62267801	0.82[ASN][1000 genomes]
rs62267806	0.85[ASN][1000 genomes]
rs62267815	0.81[ASN][1000 genomes]
rs6414338	0.87[ASN][1000 genomes]
rs6414339	0.85[ASN][1000 genomes]
rs6439682	0.87[ASN][1000 genomes]
rs6439684	0.87[ASN][1000 genomes]
rs6439722	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs67191025	0.83[ASN][1000 genomes]
rs67472895	0.83[ASN][1000 genomes]
rs6765411	0.85[ASN][1000 genomes]
rs6765598	0.85[ASN][1000 genomes]
rs6765605	0.85[ASN][1000 genomes]
rs6765940	0.86[ASN][1000 genomes]
rs6766035	0.85[ASN][1000 genomes]
rs6766382	0.85[ASN][1000 genomes]
rs6766605	0.85[ASN][1000 genomes]
rs6766681	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6768197	0.85[ASN][1000 genomes]
rs6769416	0.82[ASN][1000 genomes]
rs6770869	0.87[ASN][1000 genomes]
rs6771099	0.87[ASN][1000 genomes]
rs67743720	0.83[ASN][1000 genomes]
rs6776813	0.85[ASN][1000 genomes]
rs67838020	0.83[ASN][1000 genomes]
rs6791813	0.85[ASN][1000 genomes]
rs6794694	0.82[ASN][1000 genomes]
rs68030363	0.82[ASN][1000 genomes]
rs68064286	0.82[ASN][1000 genomes]
rs6806695	0.84[ASN][1000 genomes]
rs68091373	0.85[ASN][1000 genomes]
rs6809326	0.85[ASN][1000 genomes]
rs6809422	0.82[ASN][1000 genomes]
rs6809633	0.85[ASN][1000 genomes]
rs68151968	0.83[ASN][1000 genomes]
rs72922871	0.83[ASN][1000 genomes]
rs72927015	0.82[ASN][1000 genomes]
rs72927019	0.83[ASN][1000 genomes]
rs72927022	0.83[ASN][1000 genomes]
rs72927033	0.82[ASN][1000 genomes]
rs72927035	0.82[ASN][1000 genomes]
rs73135346	0.83[ASN][1000 genomes]
rs73135348	0.83[ASN][1000 genomes]
rs73135351	0.83[ASN][1000 genomes]
rs73853270	0.82[ASN][1000 genomes]
rs7426834	0.85[ASN][1000 genomes]
rs7430016	0.85[ASN][1000 genomes]
rs7623031	0.81[JPT][hapmap]
rs7628787	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7633244	0.87[ASN][1000 genomes]
rs7634043	0.85[ASN][1000 genomes]
rs7634063	0.88[ASN][1000 genomes]
rs7634274	0.88[ASN][1000 genomes]
rs7634735	0.87[ASN][1000 genomes]
rs7640900	0.87[ASN][1000 genomes]
rs7645384	0.88[ASN][1000 genomes]
rs7645400	0.88[ASN][1000 genomes]
rs7647986	0.88[ASN][1000 genomes]
rs872002	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9812143	0.87[ASN][1000 genomes]
rs9824733	0.87[ASN][1000 genomes]
rs9840421	0.85[ASN][1000 genomes]
rs9848264	0.91[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9851509	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs9853761	0.88[ASN][1000 genomes]
rs9859733	0.83[ASN][1000 genomes]
rs9879287	0.83[ASN][1000 genomes]
rs9879316	0.85[ASN][1000 genomes]
rs9883025	0.82[ASN][1000 genomes]
rs995557	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv870074	chr3:97903273-97948850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv2763288	chr3:97908670-97947253	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv432462	chr3:97918267-98001710	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv877211	chr3:97919363-97958280	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv591063	chr3:97924688-97958280	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv591064	chr3:97931105-97958280	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv877212	chr3:97931105-98033400	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv1004762	chr3:97935701-98000227	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv1008569	chr3:97937168-97983117	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97942400-97943400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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