Variant report

Variant	rs872002
Chromosome Location	chr3:97959895-97959896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1008191	0.84[AMR][1000 genomes]
rs1123188	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11710803	0.81[ASN][1000 genomes]
rs11715052	0.81[ASN][1000 genomes]
rs11718318	0.81[ASN][1000 genomes]
rs11720576	0.81[ASN][1000 genomes]
rs11914600	0.81[ASN][1000 genomes]
rs11917362	0.81[AMR][1000 genomes]
rs11923541	0.81[ASN][1000 genomes]
rs11929098	0.84[AMR][1000 genomes]
rs12631405	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12632368	0.84[AMR][1000 genomes]
rs12632378	0.86[AMR][1000 genomes]
rs12633126	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12636571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636614	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12636903	0.86[AMR][1000 genomes]
rs12636942	0.84[AMR][1000 genomes]
rs12637340	0.88[AMR][1000 genomes]
rs12637378	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637769	0.84[AMR][1000 genomes]
rs12638463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638749	0.84[AMR][1000 genomes]
rs12638827	0.88[AMR][1000 genomes]
rs12638881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638958	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12639159	0.85[AMR][1000 genomes]
rs12639163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066249	0.85[AMR][1000 genomes]
rs13066311	0.88[AMR][1000 genomes]
rs13067366	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13075581	0.84[AMR][1000 genomes]
rs13079269	0.86[AMR][1000 genomes]
rs13080412	0.84[AMR][1000 genomes]
rs13081420	0.81[ASN][1000 genomes]
rs13086001	0.84[AMR][1000 genomes]
rs13088051	0.84[AMR][1000 genomes]
rs13088168	0.81[ASN][1000 genomes]
rs13090539	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13096400	0.84[AMR][1000 genomes]
rs13321188	0.84[ASN][1000 genomes]
rs1391151	0.81[ASN][1000 genomes]
rs1391156	0.85[AMR][1000 genomes]
rs1497531	0.82[AMR][1000 genomes]
rs1497532	0.82[AMR][1000 genomes]
rs1532465	0.80[ASN][1000 genomes]
rs1548142	0.81[ASN][1000 genomes]
rs1587281	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839400	0.81[ASN][1000 genomes]
rs16839434	0.81[ASN][1000 genomes]
rs16839438	0.81[ASN][1000 genomes]
rs16839446	0.81[ASN][1000 genomes]
rs16839647	0.84[AMR][1000 genomes]
rs1846078	0.81[ASN][1000 genomes]
rs1846081	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1908997	0.81[ASN][1000 genomes]
rs1908998	0.81[ASN][1000 genomes]
rs1908999	0.81[ASN][1000 genomes]
rs1960452	0.82[ASN][1000 genomes]
rs1964019	0.85[AMR][1000 genomes]
rs1964021	0.83[AMR][1000 genomes]
rs2007156	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2007160	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2047389	0.81[ASN][1000 genomes]
rs2047390	0.81[ASN][1000 genomes]
rs2088408	0.81[ASN][1000 genomes]
rs2132890	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2132891	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2132898	0.84[AMR][1000 genomes]
rs2316269	0.84[AMR][1000 genomes]
rs2316299	0.81[ASN][1000 genomes]
rs2316300	0.81[ASN][1000 genomes]
rs28481861	0.81[ASN][1000 genomes]
rs28678410	0.81[ASN][1000 genomes]
rs2873119	0.81[ASN][1000 genomes]
rs2873120	0.81[ASN][1000 genomes]
rs2873121	0.81[ASN][1000 genomes]
rs34111209	0.81[ASN][1000 genomes]
rs34156823	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34174679	0.89[ASN][1000 genomes]
rs34298341	0.88[AMR][1000 genomes]
rs34573833	0.81[ASN][1000 genomes]
rs34721537	0.86[AMR][1000 genomes]
rs34745979	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34829706	0.86[AMR][1000 genomes]
rs34918234	0.81[ASN][1000 genomes]
rs35015849	0.81[AMR][1000 genomes]
rs35025561	0.81[ASN][1000 genomes]
rs35122376	0.81[ASN][1000 genomes]
rs35133117	0.86[AMR][1000 genomes]
rs35200215	0.81[ASN][1000 genomes]
rs35327048	0.81[ASN][1000 genomes]
rs35370148	0.86[AMR][1000 genomes]
rs35468350	0.83[AMR][1000 genomes]
rs35568466	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35584221	0.84[AMR][1000 genomes]
rs35808942	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35907125	0.81[ASN][1000 genomes]
rs35939420	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36064521	0.84[AMR][1000 genomes]
rs36153673	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4264769	0.81[ASN][1000 genomes]
rs4286458	0.81[ASN][1000 genomes]
rs4334683	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4388016	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4452365	0.81[ASN][1000 genomes]
rs4463010	0.80[ASN][1000 genomes]
rs4463011	0.80[ASN][1000 genomes]
rs4464499	0.81[ASN][1000 genomes]
rs4482695	0.81[ASN][1000 genomes]
rs4519740	0.84[AMR][1000 genomes]
rs4603997	0.82[AMR][1000 genomes]
rs4624601	0.81[ASN][1000 genomes]
rs4857086	0.88[AMR][1000 genomes]
rs4857344	0.81[ASN][1000 genomes]
rs4857345	0.81[ASN][1000 genomes]
rs4857346	0.81[ASN][1000 genomes]
rs4857347	0.81[ASN][1000 genomes]
rs4857348	0.81[ASN][1000 genomes]
rs4857349	0.81[ASN][1000 genomes]
rs4857350	0.81[ASN][1000 genomes]
rs4857351	0.81[ASN][1000 genomes]
rs4857354	0.82[ASN][1000 genomes]
rs4857363	0.81[AMR][1000 genomes]
rs5000372	0.81[ASN][1000 genomes]
rs5000376	0.81[ASN][1000 genomes]
rs5000377	0.81[ASN][1000 genomes]
rs56220142	0.86[AMR][1000 genomes]
rs57420324	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58407128	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59697145	0.83[AMR][1000 genomes]
rs62267190	0.81[ASN][1000 genomes]
rs62267191	0.81[ASN][1000 genomes]
rs62267192	0.81[ASN][1000 genomes]
rs62267258	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6766681	0.81[ASN][1000 genomes]
rs6805802	0.84[AMR][1000 genomes]
rs71311371	0.86[AMR][1000 genomes]
rs7628787	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7634063	0.81[ASN][1000 genomes]
rs7634274	0.81[ASN][1000 genomes]
rs7640900	0.80[ASN][1000 genomes]
rs7641621	0.84[AMR][1000 genomes]
rs7641820	0.84[AMR][1000 genomes]
rs7645384	0.81[ASN][1000 genomes]
rs7645400	0.81[ASN][1000 genomes]
rs7647986	0.81[ASN][1000 genomes]
rs9790053	0.83[AMR][1000 genomes]
rs9812143	0.82[ASN][1000 genomes]
rs9853761	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv432462	chr3:97918267-98001710	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv877212	chr3:97931105-98033400	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1004762	chr3:97935701-98000227	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1008569	chr3:97937168-97983117	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv965340	chr3:97957002-97980365	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3444875	chr3:97957818-97983549	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97959000-97961600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:97959200-97960600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:97959200-97961400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:97959200-97961400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:97959200-97961800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:97959400-97961400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:97959600-97960000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:97959800-97960400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:97959800-97960600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:97959800-97962000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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