Variant report

Variant	rs34721537
Chromosome Location	chr3:98038651-98038652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1008191	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1123188	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11917362	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11929098	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631405	0.80[AMR][1000 genomes]
rs12632368	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12632378	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12633948	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12636571	0.86[AMR][1000 genomes]
rs12636903	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12636942	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637336	0.83[AMR][1000 genomes]
rs12637340	0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12637378	0.84[AMR][1000 genomes]
rs12637769	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12638463	0.86[AMR][1000 genomes]
rs12638749	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638827	0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12638881	0.86[AMR][1000 genomes]
rs12639159	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12639163	0.86[AMR][1000 genomes]
rs13060711	0.81[AMR][1000 genomes]
rs13063426	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13066249	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13066311	0.98[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13067366	0.86[AMR][1000 genomes]
rs13067773	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13075581	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13079269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080412	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080694	0.87[AMR][1000 genomes]
rs13086001	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088051	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13096400	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391152	0.87[AMR][1000 genomes]
rs1391156	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1497531	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1497532	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1587281	0.83[AMR][1000 genomes]
rs16839427	0.87[AMR][1000 genomes]
rs16839430	0.87[AMR][1000 genomes]
rs16839647	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846081	0.80[AMR][1000 genomes]
rs1964019	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1964021	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2132898	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2316269	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34127316	0.85[AMR][1000 genomes]
rs34156823	0.80[AMR][1000 genomes]
rs34298341	0.98[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34829706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990660	0.81[AMR][1000 genomes]
rs35015849	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35133117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212708	0.87[AMR][1000 genomes]
rs35370148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35468350	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35584221	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35627913	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35807053	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36064521	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3937916	0.89[ASN][1000 genomes]
rs4061832	0.89[ASN][1000 genomes]
rs4519740	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574333	0.89[AMR][1000 genomes]
rs4603997	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4857086	0.98[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4857363	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56220142	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697145	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs66498739	0.87[AMR][1000 genomes]
rs6805802	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71311371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73854481	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7613182	0.89[ASN][1000 genomes]
rs7641621	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641820	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872002	0.86[AMR][1000 genomes]
rs924227	0.89[ASN][1000 genomes]
rs9790053	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv34138	chr3:98034684-98045927	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv980018	chr3:98036829-98044703	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98028400-98039400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:98030800-98041800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:98036200-98041200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:98037000-98039400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:98037000-98040000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:98038600-98041600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links