Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:79581022..79584954-chr4:79599701..79603406,3	K562	blood:
2	chr4:79599061..79602262-chr4:79610175..79613299,3	K562	blood:
3	chr4:79599818..79602237-chr4:79613236..79615179,2	K562	blood:
4	chr4:79596170..79597849-chr4:79599873..79602349,2	MCF-7	breast:
5	chr4:79594982..79596748-chr4:79600792..79602854,2	K562	blood:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANXA3-1	chr4:79601915-79603817	ENSG00000251442
2	lnc-ANXA3-1	chr4:79601915-79603853	ENSG00000251442
3	lnc-ANXA3-1	chr4:79601915-79603546	ENSG00000251442
4	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097070
5	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097071
6	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097072
7	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097073
8	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097074
9	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097075
10	lnc-ANXA3-1	chr4:79601913-79604339	NONHSAT097076

No data

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1042515	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap]
rs11727844	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs11728572	0.83[CHB][hapmap]
rs11729862	0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs17003396	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[TSI][hapmap]
rs35628566	0.82[AMR][1000 genomes]
rs4382063	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5950	0.86[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs6817792	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs72607865	0.82[AMR][1000 genomes]
rs72607866	0.82[AMR][1000 genomes]
rs7661370	0.96[GIH][hapmap];0.90[MEX][hapmap]
rs7668240	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12641789	ANXA3	cis	multi-tissue	Pritchard
rs12641789	ART3	cis	parietal	SCAN
rs12641789	SCARB2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79599000-79603000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:79599200-79602600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:79599200-79605400	Weak transcription	Small Intestine	intestine
4	chr4:79601000-79602200	Enhancers	K562	blood
5	chr4:79601200-79602800	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search: