Variant report

Variant	rs11728572
Chromosome Location	chr4:79624741-79624742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79620166..79622821-chr4:79623905..79627089,5	K562	blood:
2	chr4:79612799..79615666-chr4:79623635..79625663,2	K562	blood:
3	chr4:79624162..79626279-chr4:79696304..79697859,2	K562	blood:
4	chr4:79616898..79618818-chr4:79622032..79624929,2	K562	blood:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10005471	0.82[JPT][hapmap]
rs10010709	0.80[JPT][hapmap]
rs10518201	0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs10518202	0.87[EUR][1000 genomes]
rs10518205	0.82[JPT][hapmap]
rs10518206	0.82[JPT][hapmap]
rs11729862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12641797	0.89[JPT][hapmap]
rs12643807	0.82[JPT][hapmap]
rs12644278	0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs12648219	0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs12648396	1.00[JPT][hapmap]
rs1426139	0.82[JPT][hapmap]
rs16997408	0.81[JPT][hapmap]
rs17003427	0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17003443	0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs17003451	0.89[JPT][hapmap]
rs17003464	0.82[JPT][hapmap]
rs17003465	0.86[JPT][hapmap]
rs17003472	0.82[JPT][hapmap]
rs17003478	0.87[JPT][hapmap]
rs17003479	0.87[JPT][hapmap]
rs17003488	0.82[JPT][hapmap]
rs1972691	0.89[JPT][hapmap]
rs1978552	0.89[EUR][1000 genomes]
rs2033060	0.82[JPT][hapmap]
rs2162228	0.82[JPT][hapmap]
rs2288255	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28499303	0.89[EUR][1000 genomes]
rs3775513	0.82[JPT][hapmap]
rs3775514	0.82[JPT][hapmap]
rs3775515	0.82[JPT][hapmap]
rs3775516	0.82[JPT][hapmap]
rs3775518	0.88[JPT][hapmap]
rs3775519	0.89[JPT][hapmap]
rs3775522	0.89[JPT][hapmap]
rs3775525	0.88[JPT][hapmap]
rs3796681	0.82[JPT][hapmap]
rs3796682	0.82[JPT][hapmap]
rs3822107	0.82[JPT][hapmap]
rs41418051	0.87[EUR][1000 genomes]
rs4382063	0.82[JPT][hapmap]
rs4432766	0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs4550959	0.82[JPT][hapmap]
rs4637427	0.86[AMR][1000 genomes]
rs57011679	0.89[EUR][1000 genomes]
rs57707267	0.89[EUR][1000 genomes]
rs58634945	0.89[EUR][1000 genomes]
rs59994556	0.89[EUR][1000 genomes]
rs62308350	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62308353	0.89[EUR][1000 genomes]
rs62308358	0.89[EUR][1000 genomes]
rs62310760	0.85[EUR][1000 genomes]
rs62310763	0.87[EUR][1000 genomes]
rs6534005	0.82[JPT][hapmap]
rs6814884	0.89[JPT][hapmap]
rs6839280	0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs6843114	0.82[JPT][hapmap]
rs6845695	0.82[JPT][hapmap]
rs6850116	0.82[JPT][hapmap]
rs6857679	0.89[EUR][1000 genomes]
rs727760	0.89[EUR][1000 genomes]
rs727761	0.89[EUR][1000 genomes]
rs7439893	0.81[EUR][1000 genomes]
rs7662194	0.89[JPT][hapmap]
rs7681426	0.82[JPT][hapmap]
rs7682144	0.82[JPT][hapmap]
rs7691065	0.82[JPT][hapmap]
rs7692418	0.82[JPT][hapmap]
rs7692450	0.86[JPT][hapmap]
rs7696247	0.82[JPT][hapmap]
rs9992277	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79624600-79624800	Weak transcription	K562	blood
2	chr4:79624600-79625000	Enhancers	Monocytes-CD14+_RO01746	blood

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