Variant report

Variant	rs10518202
Chromosome Location	chr4:79679677-79679678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79675645..79678606-chr4:79678648..79682266,4	K562	blood:
2	chr4:79675924..79678633-chr4:79679158..79682139,3	K562	blood:
3	chr4:79679599..79681509-chr4:79684030..79686056,2	K562	blood:

Extended variants
information (count: 184 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10005471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10010709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs10027127	0.89[ASN][1000 genomes]
rs10213354	0.96[ASN][1000 genomes]
rs10518201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518205	0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs10518206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10518208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10518209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11728572	0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs11729862	0.82[EUR][1000 genomes]
rs12641797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12643807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12644278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12644685	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs12645310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12647482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12647524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12647653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12648219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12648396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12648450	0.86[ASN][1000 genomes]
rs12649750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs12649863	0.87[ASN][1000 genomes]
rs12649978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12650337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs1426137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1426139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1564458	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs16997408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs17003427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17003443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17003451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17003453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs17003454	1.00[CEU][hapmap];0.96[ASN][1000 genomes]
rs17003464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs17003465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17003472	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17003478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17003479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs17003488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs17003489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs17003492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs17003499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs17003500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs17003503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17003504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17003511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs17008951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs1834517	0.96[ASN][1000 genomes]
rs1972691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1978552	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2033061	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2033062	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2033063	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2114203	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2127781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2162228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs2170243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs2288255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs2291181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2306443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs28372745	0.89[ASN][1000 genomes]
rs28410307	0.83[ASN][1000 genomes]
rs28411173	0.87[ASN][1000 genomes]
rs28489278	0.82[ASN][1000 genomes]
rs28499303	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28515480	0.98[ASN][1000 genomes]
rs28579738	0.98[ASN][1000 genomes]
rs28587143	0.98[ASN][1000 genomes]
rs28621590	0.98[ASN][1000 genomes]
rs2867496	1.00[CEU][hapmap]
rs28719734	0.85[ASN][1000 genomes]
rs2903591	0.96[ASN][1000 genomes]
rs35741786	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3775514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs3775515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3775516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.96[ASN][1000 genomes]
rs3775518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3775522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3775525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs3796682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3811766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs3822107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs3822108	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41418051	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41509244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs4432766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4550959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4637427	0.85[ASN][1000 genomes]
rs56802690	0.89[ASN][1000 genomes]
rs57011679	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57429247	0.89[ASN][1000 genomes]
rs57574345	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57707267	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57767544	0.82[ASN][1000 genomes]
rs58634945	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58761040	0.82[ASN][1000 genomes]
rs59030520	0.96[ASN][1000 genomes]
rs59707131	0.82[ASN][1000 genomes]
rs59994556	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60830908	0.89[ASN][1000 genomes]
rs60981779	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61073409	0.87[ASN][1000 genomes]
rs61193392	0.85[ASN][1000 genomes]
rs61470194	0.94[ASN][1000 genomes]
rs61671866	0.80[ASN][1000 genomes]
rs62307961	0.85[ASN][1000 genomes]
rs62307962	0.85[ASN][1000 genomes]
rs62307963	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62307964	0.85[ASN][1000 genomes]
rs62307966	0.85[ASN][1000 genomes]
rs62307967	0.87[ASN][1000 genomes]
rs62307968	0.87[ASN][1000 genomes]
rs62307994	0.86[ASN][1000 genomes]
rs62307995	0.84[ASN][1000 genomes]
rs62307996	0.84[ASN][1000 genomes]
rs62308000	0.82[ASN][1000 genomes]
rs62308001	0.82[ASN][1000 genomes]
rs62308002	0.85[ASN][1000 genomes]
rs62308004	0.85[ASN][1000 genomes]
rs62308006	0.85[ASN][1000 genomes]
rs62308007	0.85[ASN][1000 genomes]
rs62308009	0.85[ASN][1000 genomes]
rs62308010	0.85[ASN][1000 genomes]
rs62308011	0.85[ASN][1000 genomes]
rs62308012	0.85[ASN][1000 genomes]
rs62308013	0.85[ASN][1000 genomes]
rs62308042	0.85[ASN][1000 genomes]
rs62308350	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308353	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62308358	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310760	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62310763	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310789	0.98[ASN][1000 genomes]
rs62310790	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310793	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310795	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310796	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62310800	0.98[ASN][1000 genomes]
rs62310803	0.98[ASN][1000 genomes]
rs62310804	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310806	0.96[ASN][1000 genomes]
rs62310809	0.95[ASN][1000 genomes]
rs62310810	0.96[ASN][1000 genomes]
rs62310811	0.93[ASN][1000 genomes]
rs62310843	0.85[ASN][1000 genomes]
rs6534005	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.96[ASN][1000 genomes]
rs6814884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6828501	0.96[ASN][1000 genomes]
rs6830661	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6838118	0.98[ASN][1000 genomes]
rs6839280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6843114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs6844426	0.89[ASN][1000 genomes]
rs6845695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6850116	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs6854774	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6857012	0.84[ASN][1000 genomes]
rs6857679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs727760	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs727761	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7439893	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7671578	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7674715	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7681040	0.85[ASN][1000 genomes]
rs7681426	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7682144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7691065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7691825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7692418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7692450	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7694563	0.85[ASN][1000 genomes]
rs7696247	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs9992277	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10518202	ANXA3	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79671800-79682600	Weak transcription	K562	blood
2	chr4:79678200-79682000	Weak transcription	NHDF-Ad	bronchial
3	chr4:79678800-79679800	Enhancers	Fetal Intestine Large	intestine
4	chr4:79678800-79679800	Enhancers	Fetal Intestine Small	intestine
5	chr4:79678800-79679800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:79679400-79687400	Weak transcription	Rectal Mucosa Donor 29	rectum

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