Variant report

Variant	rs62308358
Chromosome Location	chr4:79668948-79668949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79668400..79670810-chr4:79695190..79697374,3	K562	blood:
2	chr4:79656229..79658092-chr4:79667705..79669486,2	K562	blood:
3	chr4:79668464..79671093-chr4:79675204..79677763,2	K562	blood:
4	chr4:79666351..79669068-chr4:79669581..79671853,2	K562	blood:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10005471	0.81[ASN][1000 genomes]
rs10010709	0.85[ASN][1000 genomes]
rs10027127	0.85[ASN][1000 genomes]
rs10213354	0.93[ASN][1000 genomes]
rs10518201	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518202	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518205	0.81[ASN][1000 genomes]
rs10518206	0.84[ASN][1000 genomes]
rs10518208	0.83[ASN][1000 genomes]
rs10518209	0.83[ASN][1000 genomes]
rs11728572	0.89[EUR][1000 genomes]
rs11729862	0.84[EUR][1000 genomes]
rs12641797	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12643807	0.83[ASN][1000 genomes]
rs12644278	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644502	0.84[ASN][1000 genomes]
rs12644685	0.84[ASN][1000 genomes]
rs12645310	0.84[ASN][1000 genomes]
rs12647482	0.84[ASN][1000 genomes]
rs12647524	0.84[ASN][1000 genomes]
rs12647653	0.84[ASN][1000 genomes]
rs12648219	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648396	0.94[ASN][1000 genomes]
rs12648450	0.84[ASN][1000 genomes]
rs12649750	0.83[ASN][1000 genomes]
rs12649863	0.84[ASN][1000 genomes]
rs12649978	0.83[ASN][1000 genomes]
rs12650337	0.84[ASN][1000 genomes]
rs1426137	0.84[ASN][1000 genomes]
rs1426139	0.85[ASN][1000 genomes]
rs1564458	0.83[ASN][1000 genomes]
rs16997408	0.81[ASN][1000 genomes]
rs17003427	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17003443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003450	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003451	0.94[ASN][1000 genomes]
rs17003453	0.93[ASN][1000 genomes]
rs17003454	0.93[ASN][1000 genomes]
rs17003464	0.84[ASN][1000 genomes]
rs17003465	0.85[ASN][1000 genomes]
rs17003472	0.84[ASN][1000 genomes]
rs17003478	0.84[ASN][1000 genomes]
rs17003479	0.81[ASN][1000 genomes]
rs17003488	0.84[ASN][1000 genomes]
rs17003489	0.82[ASN][1000 genomes]
rs17003492	0.84[ASN][1000 genomes]
rs17003503	0.81[ASN][1000 genomes]
rs17003504	0.83[ASN][1000 genomes]
rs17003511	0.83[ASN][1000 genomes]
rs1834517	0.93[ASN][1000 genomes]
rs1972691	0.94[ASN][1000 genomes]
rs1978552	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033060	0.81[ASN][1000 genomes]
rs2033062	0.81[ASN][1000 genomes]
rs2033063	0.81[ASN][1000 genomes]
rs2114203	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2127781	0.83[ASN][1000 genomes]
rs2162228	0.93[ASN][1000 genomes]
rs2170243	0.83[ASN][1000 genomes]
rs2288255	0.81[ASN][1000 genomes]
rs2306443	0.83[ASN][1000 genomes]
rs28372745	0.85[ASN][1000 genomes]
rs28410307	0.81[ASN][1000 genomes]
rs28411173	0.83[ASN][1000 genomes]
rs28499303	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28515480	0.94[ASN][1000 genomes]
rs28579738	0.94[ASN][1000 genomes]
rs28587143	0.94[ASN][1000 genomes]
rs28621590	0.94[ASN][1000 genomes]
rs28719734	0.82[ASN][1000 genomes]
rs2903591	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35741786	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775513	0.84[ASN][1000 genomes]
rs3775514	0.82[ASN][1000 genomes]
rs3775515	0.84[ASN][1000 genomes]
rs3775516	0.93[ASN][1000 genomes]
rs3775518	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775519	0.94[ASN][1000 genomes]
rs3775522	0.94[ASN][1000 genomes]
rs3775525	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796681	0.84[ASN][1000 genomes]
rs3796682	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3811766	0.83[ASN][1000 genomes]
rs3822107	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3822108	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41418051	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41509244	0.83[ASN][1000 genomes]
rs4432766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550959	0.93[ASN][1000 genomes]
rs4637427	0.83[ASN][1000 genomes]
rs56802690	0.85[ASN][1000 genomes]
rs57011679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57429247	0.85[ASN][1000 genomes]
rs57574345	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57707267	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58634945	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59030520	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59994556	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60830908	0.85[ASN][1000 genomes]
rs60981779	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61073409	0.84[ASN][1000 genomes]
rs61193392	0.81[ASN][1000 genomes]
rs61470194	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62307961	0.81[ASN][1000 genomes]
rs62307962	0.81[ASN][1000 genomes]
rs62307963	0.81[ASN][1000 genomes]
rs62307964	0.81[ASN][1000 genomes]
rs62307966	0.81[ASN][1000 genomes]
rs62307967	0.84[ASN][1000 genomes]
rs62307968	0.84[ASN][1000 genomes]
rs62307994	0.84[ASN][1000 genomes]
rs62307995	0.82[ASN][1000 genomes]
rs62307996	0.82[ASN][1000 genomes]
rs62308002	0.83[ASN][1000 genomes]
rs62308004	0.83[ASN][1000 genomes]
rs62308006	0.83[ASN][1000 genomes]
rs62308007	0.83[ASN][1000 genomes]
rs62308009	0.83[ASN][1000 genomes]
rs62308010	0.83[ASN][1000 genomes]
rs62308011	0.83[ASN][1000 genomes]
rs62308012	0.83[ASN][1000 genomes]
rs62308013	0.83[ASN][1000 genomes]
rs62308042	0.83[ASN][1000 genomes]
rs62308350	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62308353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62310760	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62310763	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310789	0.94[ASN][1000 genomes]
rs62310790	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310793	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310795	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310796	0.93[ASN][1000 genomes]
rs62310800	0.94[ASN][1000 genomes]
rs62310803	0.94[ASN][1000 genomes]
rs62310804	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62310806	0.93[ASN][1000 genomes]
rs62310809	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62310810	0.93[ASN][1000 genomes]
rs62310811	0.89[ASN][1000 genomes]
rs62310843	0.81[ASN][1000 genomes]
rs6534005	0.93[ASN][1000 genomes]
rs6814884	0.94[ASN][1000 genomes]
rs6828501	0.93[ASN][1000 genomes]
rs6830661	0.81[ASN][1000 genomes]
rs6838118	0.94[ASN][1000 genomes]
rs6839280	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843114	0.81[ASN][1000 genomes]
rs6844426	0.85[ASN][1000 genomes]
rs6845695	0.93[ASN][1000 genomes]
rs6850116	0.81[ASN][1000 genomes]
rs6854774	0.81[ASN][1000 genomes]
rs6857679	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7439893	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662194	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7671578	0.83[ASN][1000 genomes]
rs7674715	0.81[ASN][1000 genomes]
rs7681040	0.81[ASN][1000 genomes]
rs7681426	0.81[ASN][1000 genomes]
rs7682144	0.81[ASN][1000 genomes]
rs7691065	0.81[ASN][1000 genomes]
rs7691825	0.81[ASN][1000 genomes]
rs7692418	0.81[ASN][1000 genomes]
rs7692450	0.81[ASN][1000 genomes]
rs7694563	0.81[ASN][1000 genomes]
rs7696247	0.81[ASN][1000 genomes]
rs9992277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79660400-79669400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr4:79668000-79669400	Enhancers	NHDF-Ad	bronchial
3	chr4:79668200-79670000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:79668400-79669800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:79668400-79670400	Weak transcription	K562	blood
6	chr4:79668400-79671600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:79668600-79669000	Weak transcription	NHLF	lung
8	chr4:79668600-79669400	Enhancers	HSMMtube	muscle
9	chr4:79668600-79671600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:79668800-79669200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links