Variant report

Variant	rs28499303
Chromosome Location	chr4:79651057-79651058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79640304..79643611-chr4:79647879..79654272,6	K562	blood:
2	chr4:79646252..79649029-chr4:79649709..79652341,2	K562	blood:
3	chr4:79642452..79644169-chr4:79648847..79652210,3	K562	blood:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10010709	0.84[ASN][1000 genomes]
rs10027127	0.84[ASN][1000 genomes]
rs10213354	0.92[ASN][1000 genomes]
rs10518201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518202	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518206	0.83[ASN][1000 genomes]
rs10518208	0.82[ASN][1000 genomes]
rs10518209	0.82[ASN][1000 genomes]
rs11728572	0.89[EUR][1000 genomes]
rs11729862	0.84[EUR][1000 genomes]
rs12641797	0.93[ASN][1000 genomes]
rs12643807	0.82[ASN][1000 genomes]
rs12644278	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12644502	0.83[ASN][1000 genomes]
rs12644685	0.83[ASN][1000 genomes]
rs12645310	0.83[ASN][1000 genomes]
rs12647482	0.83[ASN][1000 genomes]
rs12647524	0.83[ASN][1000 genomes]
rs12647653	0.83[ASN][1000 genomes]
rs12648219	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648396	0.93[ASN][1000 genomes]
rs12648450	0.83[ASN][1000 genomes]
rs12649750	0.82[ASN][1000 genomes]
rs12649863	0.83[ASN][1000 genomes]
rs12649978	0.82[ASN][1000 genomes]
rs12650337	0.83[ASN][1000 genomes]
rs1426137	0.83[ASN][1000 genomes]
rs1426139	0.84[ASN][1000 genomes]
rs1564458	0.82[ASN][1000 genomes]
rs17003427	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17003443	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17003450	0.92[ASN][1000 genomes]
rs17003451	0.93[ASN][1000 genomes]
rs17003453	0.92[ASN][1000 genomes]
rs17003454	0.92[ASN][1000 genomes]
rs17003464	0.83[ASN][1000 genomes]
rs17003465	0.84[ASN][1000 genomes]
rs17003472	0.84[ASN][1000 genomes]
rs17003478	0.83[ASN][1000 genomes]
rs17003488	0.83[ASN][1000 genomes]
rs17003489	0.81[ASN][1000 genomes]
rs17003492	0.83[ASN][1000 genomes]
rs17003503	0.80[ASN][1000 genomes]
rs17003504	0.82[ASN][1000 genomes]
rs17003511	0.82[ASN][1000 genomes]
rs1834517	0.92[ASN][1000 genomes]
rs1972691	0.93[ASN][1000 genomes]
rs1978552	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2114203	0.93[ASN][1000 genomes]
rs2127781	0.82[ASN][1000 genomes]
rs2162228	0.92[ASN][1000 genomes]
rs2170243	0.82[ASN][1000 genomes]
rs2306443	0.82[ASN][1000 genomes]
rs28372745	0.84[ASN][1000 genomes]
rs28410307	0.80[ASN][1000 genomes]
rs28411173	0.83[ASN][1000 genomes]
rs28515480	0.93[ASN][1000 genomes]
rs28579738	0.93[ASN][1000 genomes]
rs28587143	0.93[ASN][1000 genomes]
rs28621590	0.93[ASN][1000 genomes]
rs28719734	0.81[ASN][1000 genomes]
rs2903591	0.92[ASN][1000 genomes]
rs35741786	0.93[ASN][1000 genomes]
rs3775513	0.83[ASN][1000 genomes]
rs3775514	0.81[ASN][1000 genomes]
rs3775515	0.83[ASN][1000 genomes]
rs3775516	0.92[ASN][1000 genomes]
rs3775518	0.93[ASN][1000 genomes]
rs3775519	0.93[ASN][1000 genomes]
rs3775522	0.93[ASN][1000 genomes]
rs3775525	0.93[ASN][1000 genomes]
rs3796681	0.83[ASN][1000 genomes]
rs3796682	0.83[ASN][1000 genomes]
rs3811766	0.82[ASN][1000 genomes]
rs3822107	0.82[ASN][1000 genomes]
rs3822108	0.93[ASN][1000 genomes]
rs41418051	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41509244	0.82[ASN][1000 genomes]
rs4432766	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4550959	0.92[ASN][1000 genomes]
rs4637427	0.82[ASN][1000 genomes]
rs56802690	0.84[ASN][1000 genomes]
rs57011679	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57429247	0.84[ASN][1000 genomes]
rs57574345	0.93[ASN][1000 genomes]
rs57707267	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58309391	0.84[EUR][1000 genomes]
rs58634945	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59030520	0.92[ASN][1000 genomes]
rs59994556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60830908	0.84[ASN][1000 genomes]
rs60981779	0.92[ASN][1000 genomes]
rs61073409	0.83[ASN][1000 genomes]
rs61470194	0.90[ASN][1000 genomes]
rs62307967	0.83[ASN][1000 genomes]
rs62307968	0.83[ASN][1000 genomes]
rs62307994	0.83[ASN][1000 genomes]
rs62307995	0.81[ASN][1000 genomes]
rs62307996	0.81[ASN][1000 genomes]
rs62308002	0.82[ASN][1000 genomes]
rs62308004	0.82[ASN][1000 genomes]
rs62308006	0.82[ASN][1000 genomes]
rs62308007	0.82[ASN][1000 genomes]
rs62308009	0.82[ASN][1000 genomes]
rs62308010	0.82[ASN][1000 genomes]
rs62308011	0.82[ASN][1000 genomes]
rs62308012	0.82[ASN][1000 genomes]
rs62308013	0.82[ASN][1000 genomes]
rs62308042	0.82[ASN][1000 genomes]
rs62308350	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308353	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62308358	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62310760	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310763	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310789	0.93[ASN][1000 genomes]
rs62310790	0.93[ASN][1000 genomes]
rs62310793	0.93[ASN][1000 genomes]
rs62310795	0.93[ASN][1000 genomes]
rs62310796	0.93[ASN][1000 genomes]
rs62310800	0.93[ASN][1000 genomes]
rs62310803	0.93[ASN][1000 genomes]
rs62310804	0.93[ASN][1000 genomes]
rs62310806	0.92[ASN][1000 genomes]
rs62310809	0.91[ASN][1000 genomes]
rs62310810	0.92[ASN][1000 genomes]
rs62310811	0.88[ASN][1000 genomes]
rs6534005	0.92[ASN][1000 genomes]
rs6814884	0.93[ASN][1000 genomes]
rs6828501	0.92[ASN][1000 genomes]
rs6838118	0.93[ASN][1000 genomes]
rs6839280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6844426	0.84[ASN][1000 genomes]
rs6845695	0.92[ASN][1000 genomes]
rs6857679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727760	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7439893	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7662194	0.93[ASN][1000 genomes]
rs7671578	0.82[ASN][1000 genomes]
rs9992277	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79642800-79662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:79643800-79654800	Weak transcription	Right Atrium	heart
3	chr4:79651000-79654800	Enhancers	K562	blood

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