Variant report

Variant	rs10518201
Chromosome Location	chr4:79651860-79651861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79640304..79643611-chr4:79647879..79654272,6	K562	blood:
2	chr4:79646252..79649029-chr4:79649709..79652341,2	K562	blood:
3	chr4:79651830..79655837-chr4:79695565..79699361,6	K562	blood:
4	chr4:79642452..79644169-chr4:79648847..79652210,3	K562	blood:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10005471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10010709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs10027127	0.84[ASN][1000 genomes]
rs10213354	0.92[ASN][1000 genomes]
rs10518202	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518205	0.94[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs10518206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10518208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10518209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11728572	0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs11729862	0.84[EUR][1000 genomes]
rs12641797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12643807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12644278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12644502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12644685	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12645310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12647482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12647524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12647653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12648219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12648450	0.83[ASN][1000 genomes]
rs12649750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs12649863	0.83[ASN][1000 genomes]
rs12649978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12650337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs1426137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1426139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1564458	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes]
rs16997408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17003427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17003443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17003450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes]
rs17003451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17003453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs17003454	1.00[CEU][hapmap];0.92[ASN][1000 genomes]
rs17003464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs17003465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17003472	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17003478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs17003479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17003488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs17003489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs17003492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17003499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17003500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17003503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs17003504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs17003511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs17008951	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1834517	0.92[ASN][1000 genomes]
rs1972691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1978552	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2033060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2114203	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2127781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2162228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2170243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs2288255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs2291181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2306443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs28372745	0.84[ASN][1000 genomes]
rs28410307	0.80[ASN][1000 genomes]
rs28411173	0.83[ASN][1000 genomes]
rs28499303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28515480	0.93[ASN][1000 genomes]
rs28579738	0.93[ASN][1000 genomes]
rs28587143	0.93[ASN][1000 genomes]
rs28621590	0.93[ASN][1000 genomes]
rs2867496	1.00[CEU][hapmap]
rs28719734	0.81[ASN][1000 genomes]
rs2903591	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35741786	0.93[ASN][1000 genomes]
rs3775513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3775514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs3775515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3775516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes]
rs3775518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3775519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3775522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3775525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs3796681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs3796682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3811766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs3822107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3822108	0.93[ASN][1000 genomes]
rs41418051	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41509244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs4432766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4550959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4637427	0.82[ASN][1000 genomes]
rs56802690	0.84[ASN][1000 genomes]
rs57011679	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57429247	0.84[ASN][1000 genomes]
rs57574345	0.93[ASN][1000 genomes]
rs57707267	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58309391	0.84[EUR][1000 genomes]
rs58634945	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59030520	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59994556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60830908	0.84[ASN][1000 genomes]
rs60981779	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61073409	0.83[ASN][1000 genomes]
rs61470194	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62307967	0.83[ASN][1000 genomes]
rs62307968	0.83[ASN][1000 genomes]
rs62307994	0.83[ASN][1000 genomes]
rs62307995	0.81[ASN][1000 genomes]
rs62307996	0.81[ASN][1000 genomes]
rs62308002	0.82[ASN][1000 genomes]
rs62308004	0.82[ASN][1000 genomes]
rs62308006	0.82[ASN][1000 genomes]
rs62308007	0.82[ASN][1000 genomes]
rs62308009	0.82[ASN][1000 genomes]
rs62308010	0.82[ASN][1000 genomes]
rs62308011	0.82[ASN][1000 genomes]
rs62308012	0.82[ASN][1000 genomes]
rs62308013	0.82[ASN][1000 genomes]
rs62308042	0.82[ASN][1000 genomes]
rs62308350	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308353	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62308358	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62310760	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310763	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310789	0.93[ASN][1000 genomes]
rs62310790	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62310793	0.93[ASN][1000 genomes]
rs62310795	0.93[ASN][1000 genomes]
rs62310796	0.93[ASN][1000 genomes]
rs62310800	0.93[ASN][1000 genomes]
rs62310803	0.93[ASN][1000 genomes]
rs62310804	0.93[ASN][1000 genomes]
rs62310806	0.92[ASN][1000 genomes]
rs62310809	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62310810	0.92[ASN][1000 genomes]
rs62310811	0.88[ASN][1000 genomes]
rs6534005	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes]
rs6814884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6828501	0.92[ASN][1000 genomes]
rs6830661	1.00[CEU][hapmap]
rs6838118	0.93[ASN][1000 genomes]
rs6839280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs6844426	0.84[ASN][1000 genomes]
rs6845695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6850116	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs6857679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727760	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727761	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7439893	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7662194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7671578	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7681426	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7682144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7691065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs7691825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7692418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs7692450	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7696247	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs9992277	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79642800-79662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:79643800-79654800	Weak transcription	Right Atrium	heart
3	chr4:79651000-79654800	Enhancers	K562	blood
4	chr4:79651800-79652000	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links