Variant report

Variant	rs2867496
Chromosome Location	chr4:79843697-79843698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79838465..79840244-chr4:79841781..79843720,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10005471	1.00[CEU][hapmap]
rs10010709	1.00[CEU][hapmap]
rs10518201	1.00[CEU][hapmap]
rs10518206	1.00[CEU][hapmap]
rs10518208	1.00[CEU][hapmap]
rs10518209	1.00[CEU][hapmap]
rs12641797	1.00[CEU][hapmap]
rs12643807	1.00[CEU][hapmap]
rs12644278	1.00[CEU][hapmap]
rs12644502	1.00[CEU][hapmap]
rs12644685	1.00[CEU][hapmap]
rs12645310	1.00[CEU][hapmap]
rs12647482	1.00[CEU][hapmap]
rs12647524	1.00[CEU][hapmap]
rs12647653	1.00[CEU][hapmap]
rs12648219	1.00[CEU][hapmap]
rs12648396	1.00[CEU][hapmap]
rs12649750	1.00[CEU][hapmap]
rs12649978	1.00[CEU][hapmap]
rs12650337	1.00[CEU][hapmap]
rs1426137	1.00[CEU][hapmap]
rs1426139	1.00[CEU][hapmap]
rs16997408	1.00[CEU][hapmap]
rs17003443	1.00[CEU][hapmap]
rs17003450	1.00[CEU][hapmap]
rs17003451	1.00[CEU][hapmap]
rs17003453	1.00[CEU][hapmap]
rs17003454	1.00[CEU][hapmap]
rs17003464	1.00[CEU][hapmap]
rs17003465	1.00[CEU][hapmap]
rs17003472	1.00[CEU][hapmap]
rs17003478	1.00[CEU][hapmap]
rs17003479	1.00[CEU][hapmap]
rs17003488	1.00[CEU][hapmap]
rs17003489	1.00[CEU][hapmap]
rs17003492	1.00[CEU][hapmap]
rs17003499	1.00[CEU][hapmap]
rs17003500	1.00[CEU][hapmap]
rs17003503	1.00[CEU][hapmap]
rs17003504	1.00[CEU][hapmap]
rs17003511	1.00[CEU][hapmap]
rs17008951	1.00[CEU][hapmap]
rs1972691	1.00[CEU][hapmap]
rs2033060	1.00[CEU][hapmap]
rs2127781	1.00[CEU][hapmap]
rs2162228	1.00[CEU][hapmap]
rs2170243	1.00[CEU][hapmap]
rs2288255	1.00[CEU][hapmap]
rs2291181	1.00[CEU][hapmap]
rs2306443	1.00[CEU][hapmap]
rs3775513	1.00[CEU][hapmap]
rs3775514	1.00[CEU][hapmap]
rs3775515	1.00[CEU][hapmap]
rs3775516	1.00[CEU][hapmap]
rs3775518	1.00[CEU][hapmap]
rs3775519	1.00[CEU][hapmap]
rs3775522	1.00[CEU][hapmap]
rs3775525	1.00[CEU][hapmap]
rs3796681	1.00[CEU][hapmap]
rs3796682	1.00[CEU][hapmap]
rs3811766	1.00[CEU][hapmap]
rs3822107	1.00[CEU][hapmap]
rs41509244	1.00[CEU][hapmap]
rs4432766	1.00[CEU][hapmap]
rs4550959	1.00[CEU][hapmap]
rs62308045	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6814884	1.00[CEU][hapmap]
rs6830661	1.00[CEU][hapmap]
rs6839280	1.00[CEU][hapmap]
rs6843114	1.00[CEU][hapmap]
rs6845695	1.00[CEU][hapmap]
rs6850116	1.00[CEU][hapmap]
rs6857679	1.00[CEU][hapmap]
rs7662194	1.00[CEU][hapmap]
rs7682144	1.00[CEU][hapmap]
rs7691065	1.00[CEU][hapmap]
rs7691825	1.00[CEU][hapmap]
rs7692418	1.00[CEU][hapmap]
rs7696247	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79779800-79858200	Weak transcription	Fetal Brain Male	brain
2	chr4:79794200-79850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
4	chr4:79794400-79850000	Weak transcription	Pancreas	Pancrea
5	chr4:79794800-79850200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:79794800-79858000	Weak transcription	HepG2	liver
7	chr4:79796400-79844800	Weak transcription	Fetal Heart	heart
8	chr4:79799200-79858000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:79814600-79859600	Weak transcription	Fetal Kidney	kidney
10	chr4:79815200-79845400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:79815800-79846600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:79816000-79848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:79816200-79848600	Weak transcription	Fetal Lung	lung
14	chr4:79816200-79858400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:79827400-79858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:79827400-79858000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:79829000-79859200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:79830200-79850000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:79830200-79859200	Weak transcription	Hela-S3	cervix
20	chr4:79831000-79850000	Weak transcription	Gastric	stomach
21	chr4:79831200-79858000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:79831400-79856600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:79833000-79849800	Weak transcription	Fetal Stomach	stomach
24	chr4:79833000-79850000	Weak transcription	Lung	lung
25	chr4:79833000-79850000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:79833000-79850000	Weak transcription	Spleen	Spleen
27	chr4:79833000-79850000	Weak transcription	HSMMtube	muscle
28	chr4:79833000-79859800	Weak transcription	Esophagus	oesophagus
29	chr4:79833000-79859800	Weak transcription	Right Ventricle	heart
30	chr4:79833200-79844200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:79833200-79844800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:79833200-79845000	Weak transcription	Fetal Brain Female	brain
33	chr4:79833200-79845200	Weak transcription	Left Ventricle	heart
34	chr4:79833200-79845200	Weak transcription	Thymus	Thymus
35	chr4:79833200-79846600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:79833200-79847000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:79833200-79847000	Weak transcription	HMEC	breast
38	chr4:79833200-79847400	Weak transcription	Brain Anterior Caudate	brain
39	chr4:79833200-79848600	Weak transcription	Aorta	Aorta
40	chr4:79833200-79848600	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:79833200-79849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:79833200-79849800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:79833200-79849800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:79833200-79849800	Weak transcription	Ovary	ovary
45	chr4:79833200-79850000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:79833200-79853400	Weak transcription	NHLF	lung
47	chr4:79833200-79859000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:79833200-79859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:79833400-79844800	Weak transcription	Liver	Liver
50	chr4:79833400-79845200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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