Variant report

Variant	rs6843114
Chromosome Location	chr4:79801202-79801203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79801022..79805808-chr4:79807726..79811074,5	K562	blood:
2	chr4:79800354..79803241-chr4:79808287..79809813,2	K562	blood:
3	chr4:79696491..79698405-chr4:79800839..79803388,2	MCF-7	breast:
4	chr4:79781834..79784550-chr4:79800015..79801943,2	K562	blood:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 179 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10005471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10027127	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10213354	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10518201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs10518202	0.85[ASN][1000 genomes]
rs10518205	0.94[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10518208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11728572	0.82[JPT][hapmap]
rs12641797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12643807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12644278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs12644502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644685	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12648219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12648396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs12648450	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12649750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12649863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12650337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13138117	0.95[LWK][hapmap];0.90[YRI][hapmap]
rs1426137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1426139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1564458	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16997408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap]
rs17003443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs17003450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs17003451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17003453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17003454	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17003464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17003465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17003478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17003479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17003489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17003499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17003500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17003503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17003504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17003511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17008951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1834517	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1972691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1978552	0.81[ASN][1000 genomes]
rs2033060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033061	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2033062	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033063	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2114203	0.86[ASN][1000 genomes]
rs2127781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2162228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2170243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2288255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2306443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28372745	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28410307	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28411173	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28489278	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28515480	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28579738	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28587143	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28621590	0.86[ASN][1000 genomes]
rs2867496	1.00[CEU][hapmap]
rs28719734	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2903591	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35741786	0.86[ASN][1000 genomes]
rs3775513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3775518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs3775519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs3775522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3775525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs3796681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3796682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3811766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822108	0.86[ASN][1000 genomes]
rs41418051	0.86[ASN][1000 genomes]
rs41509244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4432766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4550959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4637427	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56802690	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57011679	0.81[ASN][1000 genomes]
rs57429247	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57574345	0.86[ASN][1000 genomes]
rs57707267	0.81[ASN][1000 genomes]
rs57767544	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58761040	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59030520	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59707131	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60830908	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60981779	0.88[ASN][1000 genomes]
rs61073409	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61193392	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61470194	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61671866	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62307961	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307962	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307963	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307964	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307966	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307967	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62307968	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62307994	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62307995	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62307996	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62308000	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62308001	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62308002	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308004	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308006	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308007	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308008	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62308009	0.92[ASN][1000 genomes]
rs62308010	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308011	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308012	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308013	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308042	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308353	0.81[ASN][1000 genomes]
rs62308358	0.81[ASN][1000 genomes]
rs62310763	0.86[ASN][1000 genomes]
rs62310789	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62310790	0.86[ASN][1000 genomes]
rs62310793	0.86[ASN][1000 genomes]
rs62310795	0.86[ASN][1000 genomes]
rs62310796	0.85[ASN][1000 genomes]
rs62310800	0.86[ASN][1000 genomes]
rs62310803	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62310804	0.86[ASN][1000 genomes]
rs62310806	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62310809	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62310810	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62310811	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62310843	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534005	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6814884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6828501	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6830661	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838118	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6839280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6844426	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6845695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6850116	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854774	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857012	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs727760	0.81[ASN][1000 genomes]
rs727761	0.81[ASN][1000 genomes]
rs7439893	0.81[ASN][1000 genomes]
rs7662194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7671578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7674715	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681040	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681426	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692450	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694563	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696247	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992277	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6843114	ANXA3	cis	multi-tissue	Pritchard

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79747200-79815600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:79748800-79823600	Weak transcription	Small Intestine	intestine
3	chr4:79768400-79811400	Weak transcription	Hela-S3	cervix
4	chr4:79779000-79814400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:79779800-79858200	Weak transcription	Fetal Brain Male	brain
6	chr4:79784000-79811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:79785000-79832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:79786600-79831800	Weak transcription	Spleen	Spleen
9	chr4:79787400-79811400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:79787800-79802200	Strong transcription	Fetal Intestine Large	intestine
11	chr4:79790200-79810400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:79791000-79802400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr4:79791800-79801400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:79792400-79811400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:79792600-79803200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:79794000-79808000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:79794200-79810200	Weak transcription	A549	lung
18	chr4:79794200-79811400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:79794200-79831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:79794200-79832000	Weak transcription	Fetal Brain Female	brain
21	chr4:79794200-79832200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:79794200-79850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
24	chr4:79794400-79814400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:79794400-79850000	Weak transcription	Pancreas	Pancrea
26	chr4:79794800-79832000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:79794800-79850200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:79794800-79858000	Weak transcription	HepG2	liver
29	chr4:79795000-79808000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:79795000-79808400	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:79795000-79809000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:79795000-79811200	Weak transcription	Brain Germinal Matrix	brain
33	chr4:79795000-79813800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:79795000-79814000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:79795000-79814000	Weak transcription	NH-A	brain
36	chr4:79795000-79814800	Weak transcription	Brain Substantia Nigra	brain
37	chr4:79795000-79814800	Weak transcription	Thymus	Thymus
38	chr4:79795000-79817400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:79795000-79832200	Weak transcription	Aorta	Aorta
40	chr4:79795000-79838200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:79795200-79805000	Weak transcription	Lung	lung
42	chr4:79795200-79808400	Weak transcription	Fetal Kidney	kidney
43	chr4:79795200-79808800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:79795200-79814400	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:79795200-79814800	Weak transcription	Ovary	ovary
46	chr4:79795400-79805000	Weak transcription	Fetal Intestine Small	intestine
47	chr4:79795400-79805000	Weak transcription	Fetal Stomach	stomach
48	chr4:79795400-79814400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:79795400-79814800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:79795400-79832200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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