Variant report

Variant	rs6844426
Chromosome Location	chr4:79758507-79758508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79546113..79548024-chr4:79757297..79759344,2	K562	blood:

Extended variants
information (count: 182 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs10005471	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10010709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213354	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518201	0.84[ASN][1000 genomes]
rs10518202	0.89[ASN][1000 genomes]
rs10518205	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518206	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518208	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10518209	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641797	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643807	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644278	0.89[ASN][1000 genomes]
rs12644502	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12644685	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12645310	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12647482	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12647524	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12647653	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12648219	0.85[ASN][1000 genomes]
rs12648396	0.91[ASN][1000 genomes]
rs12648450	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12649750	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649863	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12649978	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12650337	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426137	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1426139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564458	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16997408	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003443	0.85[ASN][1000 genomes]
rs17003450	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17003451	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17003453	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003454	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17003465	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003472	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17003478	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17003479	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003488	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17003489	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17003492	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17003499	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17003500	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17003503	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003504	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17003511	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17008951	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1834517	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1972691	0.91[ASN][1000 genomes]
rs1978552	0.85[ASN][1000 genomes]
rs2033060	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033061	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2033062	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033063	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2114203	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2127781	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2162228	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2170243	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2288255	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2291181	0.91[ASN][1000 genomes]
rs2306443	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28372745	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410307	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28411173	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28489278	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28499303	0.84[ASN][1000 genomes]
rs28515480	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28579738	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28587143	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28621590	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28719734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2903591	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35741786	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775514	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775516	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775518	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775519	0.91[ASN][1000 genomes]
rs3775522	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775525	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3796681	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796682	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811766	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822107	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822108	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41418051	0.91[ASN][1000 genomes]
rs41509244	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4432766	0.85[ASN][1000 genomes]
rs4550959	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4637427	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56802690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011679	0.85[ASN][1000 genomes]
rs57429247	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57574345	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57707267	0.85[ASN][1000 genomes]
rs57767544	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58634945	0.84[ASN][1000 genomes]
rs58761040	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59030520	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59707131	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59994556	0.84[ASN][1000 genomes]
rs60830908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60981779	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61073409	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61193392	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61470194	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61671866	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62307961	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307962	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307963	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307964	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307966	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307967	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62307968	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62307994	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62307995	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62307996	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308000	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62308001	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62308002	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308004	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308006	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308007	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308008	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62308009	0.95[ASN][1000 genomes]
rs62308010	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308011	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308012	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308013	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308042	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62308350	0.84[ASN][1000 genomes]
rs62308353	0.85[ASN][1000 genomes]
rs62308358	0.85[ASN][1000 genomes]
rs62310760	0.84[ASN][1000 genomes]
rs62310763	0.91[ASN][1000 genomes]
rs62310789	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62310790	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62310793	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62310795	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62310796	0.90[ASN][1000 genomes]
rs62310800	0.91[ASN][1000 genomes]
rs62310803	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62310804	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62310806	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310809	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62310810	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310811	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62310843	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6534005	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6814884	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6828501	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6830661	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6838118	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6839280	0.85[ASN][1000 genomes]
rs6843114	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6845695	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6850116	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6854774	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6857012	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6857679	0.85[ASN][1000 genomes]
rs727760	0.85[ASN][1000 genomes]
rs727761	0.85[ASN][1000 genomes]
rs7439893	0.85[ASN][1000 genomes]
rs7662194	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7671578	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674715	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7681040	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7681426	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7682144	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7691065	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7691825	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7692418	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7692450	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7694563	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7696247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9992277	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007685	chr4:79732468-79788768	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79732400-79759200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:79738800-79793200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:79744600-79793800	Weak transcription	Psoas Muscle	Psoas
4	chr4:79745400-79760400	Strong transcription	K562	blood
5	chr4:79745800-79786400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:79746600-79761000	Strong transcription	Primary B cells from cord blood	blood
7	chr4:79746800-79760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:79746800-79761000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:79746800-79783400	Weak transcription	A549	lung
10	chr4:79747000-79759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:79747200-79815600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:79748800-79823600	Weak transcription	Small Intestine	intestine
13	chr4:79749200-79773800	Weak transcription	Esophagus	oesophagus
14	chr4:79749200-79793600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:79749400-79759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:79749400-79780000	Weak transcription	HUVEC	blood vessel
17	chr4:79749400-79782000	Weak transcription	HepG2	liver
18	chr4:79749400-79792400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:79749400-79793800	Weak transcription	Gastric	stomach
20	chr4:79749600-79759600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:79749600-79762200	Weak transcription	Pancreas	Pancrea
22	chr4:79749600-79766000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:79749600-79781000	Weak transcription	Ovary	ovary
24	chr4:79749600-79784600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:79749600-79793000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:79749600-79793600	Weak transcription	Brain Germinal Matrix	brain
27	chr4:79749600-79793800	Weak transcription	Fetal Brain Female	brain
28	chr4:79749800-79758600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:79749800-79758800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:79749800-79760000	Weak transcription	Spleen	Spleen
31	chr4:79749800-79761800	Weak transcription	Fetal Brain Male	brain
32	chr4:79749800-79762200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:79749800-79766200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:79749800-79772200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:79749800-79773600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:79749800-79781400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:79749800-79786800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:79749800-79788000	Weak transcription	Lung	lung
39	chr4:79749800-79793400	Weak transcription	Thymus	Thymus
40	chr4:79749800-79793600	Weak transcription	Colonic Mucosa	Colon
41	chr4:79750000-79758600	Weak transcription	Primary T cells from cord blood	blood
42	chr4:79750000-79766800	Weak transcription	Brain Substantia Nigra	brain
43	chr4:79750200-79762200	Weak transcription	Aorta	Aorta
44	chr4:79750200-79772200	Weak transcription	Placenta	Placenta
45	chr4:79750200-79786600	Weak transcription	Left Ventricle	heart
46	chr4:79750200-79787600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr4:79750400-79758600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:79750400-79758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:79750400-79759000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:79750400-79759400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links