Variant report

Variant	rs17003450
Chromosome Location	chr4:79704210-79704211
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79562740..79566241-chr4:79702324..79704926,3	MCF-7	breast:
2	chr4:79546177..79548904-chr4:79704201..79706828,2	K562	blood:
3	chr4:79701732..79704307-chr4:79710996..79713060,2	MCF-7	breast:
4	chr4:79703185..79706477-chr4:79708541..79712567,5	MCF-7	breast:

Extended variants
information (count: 194 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10005471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10010709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10027127	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10213354	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10518201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes]
rs10518202	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10518205	0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10518206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10518208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10518209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12641797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12643807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12644278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12644502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12644685	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12645310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12647482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12647524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12647653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12648219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs12648396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12648450	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12649750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12649863	0.87[ASN][1000 genomes]
rs12649978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12650337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1426137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1426139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564458	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];0.90[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16997408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17003427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap];0.83[ASN][1000 genomes]
rs17003443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17003451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17003453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17003454	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17003464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17003465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17003472	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17003476	0.85[YRI][hapmap]
rs17003478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17003479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17003488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17003489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17003492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17003499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17003500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17003503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17003504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17003511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17008951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1834517	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1972691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1978552	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2033061	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2033062	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2033063	0.85[ASN][1000 genomes]
rs2114203	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2127781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2162228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2170243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2288255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs2291181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2306443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28372745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28410307	0.83[ASN][1000 genomes]
rs28411173	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28489278	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28499303	0.92[ASN][1000 genomes]
rs28515480	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28579738	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28587143	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28621590	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867496	1.00[CEU][hapmap]
rs28719734	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2903591	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35741786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3775514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3775516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3822107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3822108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41418051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41509244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4432766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4550959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4637427	0.85[ASN][1000 genomes]
rs56802690	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57011679	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57429247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57574345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57707267	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57767544	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58634945	0.92[ASN][1000 genomes]
rs58761040	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59030520	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59707131	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59994556	0.92[ASN][1000 genomes]
rs60830908	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60981779	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61073409	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61193392	0.85[ASN][1000 genomes]
rs61470194	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61671866	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62307961	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62307962	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62307963	0.85[ASN][1000 genomes]
rs62307964	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62307966	0.85[ASN][1000 genomes]
rs62307967	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62307968	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62307994	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62307995	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62307996	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62308000	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62308001	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62308002	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308004	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308006	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308007	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308008	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62308009	0.85[ASN][1000 genomes]
rs62308010	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308011	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308012	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308013	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308042	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62308350	0.92[ASN][1000 genomes]
rs62308353	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62308358	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310760	0.92[ASN][1000 genomes]
rs62310763	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310789	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310790	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62310800	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310803	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310804	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62310806	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62310809	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62310810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62310811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62310843	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6534005	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6828501	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6830661	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6838118	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs6843114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs6844426	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6845695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6850116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs6854774	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6857012	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6857679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs727760	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs727761	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7439893	0.93[ASN][1000 genomes]
rs7662194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7671578	1.00[CHB][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7674715	0.85[ASN][1000 genomes]
rs7681040	0.85[ASN][1000 genomes]
rs7681426	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7682144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7691065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs7691825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7692418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7692450	0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7694563	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7696247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs9992277	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	esv1792429	chr4:79697116-79704210	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1798320	chr4:79697116-79704210	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv1801852	chr4:79697116-79704210	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1802642	chr4:79697116-79704210	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1802703	chr4:79697116-79704210	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1833723	chr4:79697116-79704210	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1833992	chr4:79697116-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv1835474	chr4:79697116-79704210	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	esv1837381	chr4:79697116-79704210	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv1845915	chr4:79697116-79704210	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17003450	ANXA3	cis	multi-tissue	Pritchard

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79698600-79708600	Weak transcription	Pancreas	Pancrea
2	chr4:79698800-79705200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:79699000-79717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:79699200-79704800	Weak transcription	Psoas Muscle	Psoas
5	chr4:79699200-79709000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:79699200-79709200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
8	chr4:79699600-79705000	Weak transcription	NH-A	brain
9	chr4:79700000-79704600	Transcr. at gene 5' and 3'	K562	blood
10	chr4:79700000-79705200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:79700000-79705200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:79700000-79708600	Weak transcription	A549	lung
13	chr4:79700200-79714200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:79700400-79704600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:79700400-79704600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:79700400-79707800	Weak transcription	Brain Germinal Matrix	brain
18	chr4:79700400-79718200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:79700600-79705000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:79700600-79705000	Weak transcription	HSMM	muscle
21	chr4:79700600-79705200	Weak transcription	Brain Substantia Nigra	brain
22	chr4:79700600-79705400	Weak transcription	HMEC	breast
23	chr4:79700600-79705600	Weak transcription	Adipose Nuclei	Adipose
24	chr4:79700600-79706600	Enhancers	Primary hematopoietic stem cells	blood
25	chr4:79700800-79705200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:79700800-79705200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:79700800-79705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:79700800-79705400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:79700800-79705600	Weak transcription	Fetal Kidney	kidney
30	chr4:79700800-79706200	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:79701200-79705200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:79701200-79708400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:79701200-79711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:79701400-79705200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:79701400-79705200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:79701400-79705400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:79701400-79705400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:79701600-79704600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:79701600-79704600	Weak transcription	HSMMtube	muscle
40	chr4:79701600-79705400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr4:79701600-79705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:79701600-79705400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:79701600-79706600	Enhancers	Fetal Intestine Large	intestine
44	chr4:79701600-79706800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:79701600-79719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:79701800-79705000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:79701800-79705200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:79701800-79709600	Enhancers	Fetal Heart	heart
49	chr4:79702000-79705200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:79702000-79705200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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