Variant report

Variant	rs12643879
Chromosome Location	chr4:127394444-127394445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127392617..127394785-chr4:127410243..127411886,2	K562	blood:
2	chr4:127393776..127396418-chr4:127400687..127402446,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1013173	0.99[ASN][1000 genomes]
rs10857114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098871	0.99[ASN][1000 genomes]
rs11098872	0.99[ASN][1000 genomes]
rs11098874	0.95[ASN][1000 genomes]
rs11098875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098877	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722574	0.99[ASN][1000 genomes]
rs11730843	0.99[ASN][1000 genomes]
rs12498233	0.99[ASN][1000 genomes]
rs12498989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501073	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501333	0.99[ASN][1000 genomes]
rs12505340	0.99[ASN][1000 genomes]
rs12506128	0.99[ASN][1000 genomes]
rs12508005	0.99[ASN][1000 genomes]
rs12508071	0.98[ASN][1000 genomes]
rs12510218	0.99[ASN][1000 genomes]
rs12512491	0.94[ASN][1000 genomes]
rs12512492	0.95[ASN][1000 genomes]
rs12641163	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649899	0.99[ASN][1000 genomes]
rs12650259	0.97[EUR][1000 genomes]
rs12651126	0.99[ASN][1000 genomes]
rs1463971	0.93[ASN][1000 genomes]
rs1508977	0.99[ASN][1000 genomes]
rs1508978	0.99[ASN][1000 genomes]
rs1508980	0.99[ASN][1000 genomes]
rs1508981	0.99[ASN][1000 genomes]
rs1508982	0.99[ASN][1000 genomes]
rs1567343	0.99[ASN][1000 genomes]
rs1567344	0.99[ASN][1000 genomes]
rs28447554	0.93[ASN][1000 genomes]
rs34165900	0.99[ASN][1000 genomes]
rs57761577	0.99[ASN][1000 genomes]
rs57902647	0.89[AMR][1000 genomes]
rs58302722	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59283242	0.91[ASN][1000 genomes]
rs61193656	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61352395	0.99[ASN][1000 genomes]
rs61359035	0.89[AMR][1000 genomes]
rs6820218	0.97[EUR][1000 genomes]
rs6840101	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv595385	chr4:127383473-127451806	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127392200-127413200	Weak transcription	K562	blood

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