Variant report

Variant	rs59283242
Chromosome Location	chr4:127382992-127382993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127374746..127378730-chr4:127382630..127385054,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1013173	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857114	0.91[ASN][1000 genomes]
rs11098871	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098872	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098874	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11098875	0.89[ASN][1000 genomes]
rs11098877	0.91[ASN][1000 genomes]
rs11722574	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11730843	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11734709	0.86[AFR][1000 genomes]
rs12498233	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12498989	0.91[ASN][1000 genomes]
rs12501073	0.91[ASN][1000 genomes]
rs12501333	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505340	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506128	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12508005	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12508071	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12510218	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12512491	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512492	0.97[ASN][1000 genomes]
rs12641163	0.91[ASN][1000 genomes]
rs12643879	0.91[ASN][1000 genomes]
rs12649899	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12651126	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1463971	0.87[ASN][1000 genomes]
rs1508977	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508978	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508980	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508981	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508982	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1567343	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1567344	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28447554	0.87[ASN][1000 genomes]
rs34165900	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57761577	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61193656	0.91[ASN][1000 genomes]
rs61352395	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127380400-127389400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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