Variant report

Variant	rs11734709
Chromosome Location	chr4:127381535-127381536
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127380458..127382977-chr4:127386383..127388629,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1013173	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11098870	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11098871	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11098872	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11098874	0.80[EUR][1000 genomes]
rs11722574	0.92[CEU][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11727424	0.85[EUR][1000 genomes]
rs11730843	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12498233	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12499737	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12500602	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12501333	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12504629	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12505340	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12506128	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12508005	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12508071	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12509491	0.88[AMR][1000 genomes]
rs12510218	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12649899	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12651126	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1355106	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1355107	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1355111	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1508977	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1508978	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1508980	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1508981	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1508982	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1508983	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1508984	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1508985	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1567343	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1567344	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34165900	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57761577	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59283242	0.86[AFR][1000 genomes]
rs61352395	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72919440	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127380400-127389400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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