Variant report

Variant	rs12500602
Chromosome Location	chr4:127379052-127379053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1013173	0.82[AMR][1000 genomes]
rs11098870	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11734709	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12499737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501333	0.84[AMR][1000 genomes]
rs12504629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505340	0.84[AMR][1000 genomes]
rs12506125	1.00[ASN][1000 genomes]
rs12506128	0.86[AMR][1000 genomes]
rs12509491	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510218	0.86[AMR][1000 genomes]
rs12512849	1.00[ASN][1000 genomes]
rs12651126	0.86[AMR][1000 genomes]
rs1355106	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355107	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355110	0.86[ASN][1000 genomes]
rs1355111	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1508980	0.82[AMR][1000 genomes]
rs1508981	0.82[AMR][1000 genomes]
rs1508982	0.82[AMR][1000 genomes]
rs1508983	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508984	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508985	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1508986	0.88[ASN][1000 genomes]
rs1567343	0.82[AMR][1000 genomes]
rs1567344	0.82[AMR][1000 genomes]
rs34165900	0.82[AMR][1000 genomes]
rs41338247	1.00[ASN][1000 genomes]
rs57761577	0.86[AMR][1000 genomes]
rs60133914	0.88[EUR][1000 genomes]
rs61352395	0.86[AMR][1000 genomes]
rs72919440	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127378800-127379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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