Variant report

Variant	rs12512849
Chromosome Location	chr4:127376679-127376680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11098870	0.87[ASN][1000 genomes]
rs12499737	1.00[ASN][1000 genomes]
rs12500602	1.00[ASN][1000 genomes]
rs12504629	1.00[ASN][1000 genomes]
rs12506125	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509491	1.00[ASN][1000 genomes]
rs1355106	1.00[ASN][1000 genomes]
rs1355107	1.00[ASN][1000 genomes]
rs1355110	0.86[ASN][1000 genomes]
rs1508983	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1508984	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1508985	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1508986	0.88[ASN][1000 genomes]
rs41338247	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519699	0.87[CEU][hapmap]
rs60133914	0.92[AFR][1000 genomes]
rs72919440	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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