Variant report

Variant	rs12644723
Chromosome Location	chr4:95942505-95942506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10018945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10023544	0.85[ASN][1000 genomes]
rs12500473	0.97[ASN][1000 genomes]
rs12512478	0.98[ASN][1000 genomes]
rs12647875	0.97[ASN][1000 genomes]
rs13102404	0.98[ASN][1000 genomes]
rs13103406	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13103870	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13104170	0.97[ASN][1000 genomes]
rs13111378	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13118960	0.81[EUR][1000 genomes]
rs13127255	0.82[EUR][1000 genomes]
rs13128282	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13146146	0.84[EUR][1000 genomes]
rs13152791	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1347345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1348605	0.97[ASN][1000 genomes]
rs1434545	0.82[EUR][1000 genomes]
rs1444922	0.95[ASN][1000 genomes]
rs17344975	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17403454	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17404327	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17411701	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17411860	0.84[EUR][1000 genomes]
rs28663472	0.93[ASN][1000 genomes]
rs34484245	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34745188	0.84[EUR][1000 genomes]
rs34755714	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35653658	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35697886	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35888953	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35966830	0.85[EUR][1000 genomes]
rs4145994	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4699831	0.84[EUR][1000 genomes]
rs62316229	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62316236	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62316238	0.83[EUR][1000 genomes]
rs62316240	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6532526	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815044	0.98[ASN][1000 genomes]
rs6815593	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6815752	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6829326	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6831094	0.93[ASN][1000 genomes]
rs6832300	0.97[ASN][1000 genomes]
rs6854585	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6855319	0.85[EUR][1000 genomes]
rs716191	0.96[ASN][1000 genomes]
rs7377902	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7662504	0.98[ASN][1000 genomes]
rs7679627	0.93[ASN][1000 genomes]
rs7681920	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7682651	0.82[EUR][1000 genomes]
rs7694043	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7698733	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95940800-95945200	Enhancers	A549	lung
2	chr4:95941400-95949000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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