Variant report

Variant	rs7679627
Chromosome Location	chr4:95949153-95949154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10018945	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10023544	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11934798	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11937369	0.86[YRI][hapmap]
rs12500473	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512478	0.91[ASN][1000 genomes]
rs12644723	0.93[ASN][1000 genomes]
rs12645001	0.95[YRI][hapmap]
rs12647875	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13102404	0.91[ASN][1000 genomes]
rs13103406	0.84[JPT][hapmap]
rs13104170	0.91[ASN][1000 genomes]
rs1347345	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1348605	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1434549	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1444922	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17344835	0.95[YRI][hapmap]
rs17412559	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17412982	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1863652	0.81[YRI][hapmap]
rs1961224	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs2077385	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs2114534	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs28663472	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775031	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6532526	0.93[ASN][1000 genomes]
rs6532527	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6815044	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816624	0.82[ASN][1000 genomes]
rs6821072	0.80[JPT][hapmap]
rs6831094	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6831697	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6832300	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs716191	0.90[ASN][1000 genomes]
rs7662504	0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7664797	0.95[YRI][hapmap]
rs7680852	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7681920	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7688238	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7698733	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95947800-95949800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95948000-95949600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:95948000-95949800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:95948000-95949800	Enhancers	A549	lung
5	chr4:95948200-95949200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:95948200-95966600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95948400-95949600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:95948600-95949600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:95948600-95949600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:95948600-95949600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:95948600-95949600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:95948800-95949200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:95949000-95949400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:95949000-95949400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:95949000-95949400	Enhancers	Fetal Heart	heart
16	chr4:95949000-95949600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr4:95949000-95949600	Enhancers	Cortex derived primary cultured neurospheres	brain

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