Variant report

Variant	rs6831697
Chromosome Location	chr4:95943026-95943027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11934798	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11937369	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes]
rs12500473	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12645001	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs12647875	0.90[AFR][1000 genomes]
rs1348605	0.91[AFR][1000 genomes]
rs1434549	0.91[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17022918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17023017	0.83[CHB][hapmap]
rs17344835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17412559	0.89[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs17412982	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs1863652	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs1961224	0.96[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28663472	0.90[AFR][1000 genomes]
rs3796432	0.83[CEU][hapmap]
rs6815044	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6832300	0.95[YRI][hapmap]
rs7664797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679627	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7680852	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7691000	0.83[EUR][1000 genomes]
rs9997720	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95940800-95945200	Enhancers	A549	lung
2	chr4:95941400-95949000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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