Variant report

Variant	rs12645674
Chromosome Location	chr4:20651507-20651508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20650338..20652484-chr4:20652879..20655131,2	K562	blood:
2	chr4:20647329..20649016-chr4:20649617..20652093,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10022322	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs10024002	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs10938801	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs10938804	0.81[JPT][hapmap]
rs12331966	1.00[CHB][hapmap]
rs12640448	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs12641186	0.94[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12644782	1.00[CHB][hapmap]
rs17551335	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17621796	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17622163	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17622371	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1985322	0.82[CHB][hapmap]
rs2052775	0.81[CHB][hapmap]
rs2162413	0.85[CEU][hapmap]
rs2288308	0.83[CHD][hapmap]
rs2322688	0.90[CHB][hapmap]
rs3764964	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs3764965	1.00[CHB][hapmap]
rs3764966	1.00[CHB][hapmap]
rs3764967	1.00[CEU][hapmap]
rs56237079	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61790748	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62410065	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62410092	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6447976	1.00[CHB][hapmap]
rs6811030	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6811505	1.00[CHB][hapmap]
rs6824850	0.96[ASN][1000 genomes]
rs725594	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs755155	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7655154	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs7681691	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs990206	1.00[CHB][hapmap]
rs9995697	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases
2	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20651000-20651600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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