Variant report

Variant	rs755155
Chromosome Location	chr4:20681989-20681990
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10017693	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs10022322	1.00[CHB][hapmap]
rs10024002	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs10025286	0.80[ASN][1000 genomes]
rs10938801	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs10938804	0.81[JPT][hapmap]
rs11932551	0.89[ASN][1000 genomes]
rs12331966	0.82[CHB][hapmap]
rs12640448	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12641186	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs12645674	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16869851	0.91[ASN][1000 genomes]
rs16869889	0.80[ASN][1000 genomes]
rs17551335	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17621796	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17622163	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17622371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052775	1.00[CHB][hapmap]
rs2162413	0.86[CEU][hapmap]
rs2288308	1.00[CHB][hapmap]
rs28374411	0.95[ASN][1000 genomes]
rs28524474	0.80[ASN][1000 genomes]
rs28788006	0.80[ASN][1000 genomes]
rs3764964	0.81[CHB][hapmap]
rs3764965	0.82[CHB][hapmap]
rs3764966	0.82[CHB][hapmap]
rs3764967	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs3796639	0.80[ASN][1000 genomes]
rs3815872	0.80[ASN][1000 genomes]
rs4510461	0.80[ASN][1000 genomes]
rs55794413	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55874299	0.91[ASN][1000 genomes]
rs56152829	0.91[ASN][1000 genomes]
rs56237079	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59335491	0.80[ASN][1000 genomes]
rs61790748	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62410065	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62410092	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62410099	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62410126	0.80[ASN][1000 genomes]
rs6447976	0.82[CHB][hapmap]
rs6811030	0.81[CHB][hapmap]
rs6811505	0.90[CHB][hapmap]
rs6831516	0.85[CHB][hapmap]
rs725594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73240292	0.80[ASN][1000 genomes]
rs7655154	1.00[CHB][hapmap]
rs7666288	0.80[ASN][1000 genomes]
rs7674453	0.80[ASN][1000 genomes]
rs7681691	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7696618	0.80[ASN][1000 genomes]
rs990206	0.82[CHB][hapmap]
rs9995697	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20674400-20684600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:20679400-20682600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20680400-20683200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:20681000-20682200	Enhancers	Fetal Lung	lung
5	chr4:20681400-20682000	Enhancers	Liver	Liver
6	chr4:20681400-20682200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:20681600-20682000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:20681600-20682200	Enhancers	Fetal Stomach	stomach
9	chr4:20681600-20682400	Enhancers	Osteobl	bone
10	chr4:20681600-20682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:20681600-20683000	Enhancers	Rectal Smooth Muscle	rectum

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