Variant report

Variant	rs1264570
Chromosome Location	chr6:30365210-30365211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30205760..30206880-chr6:30364359..30365320,6	K562	blood:
2	chr6:30325083..30325836-chr6:30364496..30366117,4	MCF-7	breast:
3	chr6:30070557..30071542-chr6:30364602..30365386,4	K562	blood:
4	chr6:30364759..30366950-chr6:30511934..30514120,2	K562	blood:
5	chr6:30325032..30326080-chr6:30364681..30365329,7	MCF-7	breast:
6	chr6:30364310..30365862-chr6:30386384..30388997,2	MCF-7	breast:
7	chr6:30344008..30344969-chr6:30364258..30365252,4	MCF-7	breast:
8	chr6:30186670..30187594-chr6:30364355..30365372,7	K562	blood:
9	chr6:30325016..30326378-chr6:30364305..30365879,10	K562	blood:
10	chr6:30332081..30333027-chr6:30364533..30365885,7	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1077501	0.81[EUR][1000 genomes]
rs1264511	0.81[EUR][1000 genomes]
rs1264542	0.86[EUR][1000 genomes]
rs1268444	0.81[EUR][1000 genomes]
rs2072111	0.88[EUR][1000 genomes]
rs2516678	0.80[EUR][1000 genomes]
rs2516685	0.86[EUR][1000 genomes]
rs2516688	0.86[EUR][1000 genomes]
rs2524175	0.81[EUR][1000 genomes]
rs2524176	0.81[EUR][1000 genomes]
rs2524180	0.81[EUR][1000 genomes]
rs2524183	0.81[EUR][1000 genomes]
rs2524189	0.81[EUR][1000 genomes]
rs2524200	0.80[EUR][1000 genomes]
rs2524205	0.86[EUR][1000 genomes]
rs2844729	0.81[EUR][1000 genomes]
rs3131114	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv969293	chr6:30348821-30368580	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30364600-30365400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30364800-30365600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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