Variant report

Variant	rs2524200
Chromosome Location	chr6:30417689-30417690
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30415302..30418095-chr6:30418692..30421060,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1077501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1264511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264542	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1264570	0.80[EUR][1000 genomes]
rs1268444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2187974	0.86[ASN][1000 genomes]
rs2516677	0.86[ASN][1000 genomes]
rs2516678	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2524175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2524176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2524179	0.84[ASN][1000 genomes]
rs2524180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2524182	0.86[ASN][1000 genomes]
rs2524183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2524186	0.85[ASN][1000 genomes]
rs2524188	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2524189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2524197	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2524198	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131114	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30416800-30417800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
2	chr6:30416800-30418000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:30416800-30418200	Bivalent Enhancer	Primary T cells from cord blood	blood
4	chr6:30417000-30418400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:30417000-30418400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:30417200-30418000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:30417200-30418400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:30417200-30418400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:30417200-30418600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:30417200-30421600	Bivalent Enhancer	Fetal Thymus	thymus
11	chr6:30417400-30417800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:30417400-30418200	Bivalent Enhancer	Dnd41	blood
13	chr6:30417400-30418400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:30417600-30417800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:30417600-30418400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:30417600-30418600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:30417600-30419600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:30417600-30419800	Enhancers	Primary hematopoietic stem cells	blood

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