Variant report

Variant	rs12647267
Chromosome Location	chr4:93782743-93782744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12649257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17019938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17019988	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17019990	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17020025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17263777	1.00[AFR][1000 genomes]
rs35451605	1.00[AMR][1000 genomes]
rs768652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003350	chr4:93566813-93821353	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1011652	chr4:93618181-93891388	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916948	chr4:93657711-93786768	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv427688	chr4:93680331-93830824	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2760848	chr4:93746511-93804020	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1010290	chr4:93753135-93830001	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv879612	chr4:93761619-93969165	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93758200-93802200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:93769400-93785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:93773800-93783000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:93777200-93786800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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