Variant report

Variant	rs17020025
Chromosome Location	chr4:93846047-93846048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12647267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12649257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17019938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17019988	1.00[AMR][1000 genomes]
rs17019990	1.00[AMR][1000 genomes]
rs17020029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17020035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17020036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17020038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17020040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17020043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17020053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17020101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35451605	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs768652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011652	chr4:93618181-93891388	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879612	chr4:93761619-93969165	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1014842	chr4:93790604-93957114	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv997640	chr4:93790604-93982695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv879613	chr4:93800605-93902882	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1013180	chr4:93812587-93875433	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1008213	chr4:93829603-93875433	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93845600-93846400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:93845600-93846600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:93845600-93846600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:93845600-93846600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:93845600-93846800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:93845800-93846200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:93845800-93846200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr4:93845800-93846200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:93845800-93846400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:93845800-93846400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links