Variant report

Variant	rs12649287
Chromosome Location	chr4:125639879-125639880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10008933	0.89[EUR][1000 genomes]
rs10023970	0.89[EUR][1000 genomes]
rs11728020	0.89[EUR][1000 genomes]
rs1498015	0.88[EUR][1000 genomes]
rs1498020	0.88[EUR][1000 genomes]
rs17178850	0.89[EUR][1000 genomes]
rs4834002	0.82[AMR][1000 genomes]
rs6852994	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72680275	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7679415	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757081	chr4:125637940-125649621	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2759281	chr4:125637940-125649621	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125635000-125644800	Weak transcription	NHDF-Ad	bronchial
2	chr4:125635200-125648000	Weak transcription	HSMM	muscle
3	chr4:125639400-125640000	Enhancers	K562	blood
4	chr4:125639800-125640000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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