Variant report

Variant	rs1498020
Chromosome Location	chr4:125658495-125658496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008933	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10023970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11728020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11939791	0.89[ASN][1000 genomes]
rs12649287	0.88[EUR][1000 genomes]
rs1498015	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1498016	0.89[ASN][1000 genomes]
rs17178850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28495672	0.81[ASN][1000 genomes]
rs4833305	0.82[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs4834002	0.81[EUR][1000 genomes]
rs6852994	0.97[EUR][1000 genomes]
rs72680275	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7679415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125656600-125659600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:125656800-125658600	Enhancers	Liver	Liver
3	chr4:125657800-125659200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:125657800-125660800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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